51 Publications by "F. Bunyak"

49 CIVA Publications and 2 external publications


L. Alzubaidi, I. Ersoy, D. Shin, and F. Bunyak

Nucleus Detection in H&E Images with Fully Convolutional Regression Networks

Proc. First International Workshop on Deep Learning for Pattern Recognition (DLPR), 2016

Bibtex, PlainText, Google Scholar
#172: K. Palaniappan, M. Poostchi, H. Aliakbarpour, R. Viguier, J. Fraser, F. Bunyak, A. Basharat, S. Suddarth, E. Blasch, R. Rao, and G. Seetharaman

Moving object detection for vehicle tracking in wide area motion imagery using 4D filtering

Proc. IEEE International Conference on Pattern Recognition (ICPR), 2016

wami, tracking

Abstract, Bibtex, PlainText, URL, Google Scholar
#168: N. Al-Shakarji, F. Bunyak, and K. Palaniappan

CS-LOFT - Color and scale adaptive tracking using Bhattacharyya distance and max pooling consistency

Proc. IEEE Applied Imagery Pattern Recognition (AIPR), 2016

color, wami, tracking, fmv, features

Abstract, Bibtex, PlainText, Google Scholar
#174: G. Seetharaman, K. Palaniappan, F. Bunyak, and R. Wang

System and method for static and moving object detection

US Patent 9,454,819, 2016

flux tensor, object detection, ftsg, patent

Abstract, Bibtex, PlainText, PDF, URL, Google Scholar
#170: M. Poostchi, H. Aliakbarpour, R. Viguier, F. Bunyak, K. Palaniappan, and G. Seetharaman

Semantic depth map fusion for moving vehicle detection in aerial video

Proc. IEEE Conference on Computer Vision and Pattern Recognition (CVPR) Workshops, pgs. 32-40, 2016

wami, tracking, fmv, features, motion, image analysis

Abstract, Bibtex, PlainText, PDF, URL, Google Scholar
#173: Z. Al-Milaji, I. Ersoy, K. Palaniappan, and F. Bunyak

Hybrid Deep Learning Framework for the Classification of Epithelial and Stromal Tissues in H&E Images

Proc. First International Workshop on Deep Learning for Pattern Recognition (DLPR), 2016

deep learning, histopathology, segmentation

Bibtex, PlainText, URL, Google Scholar
K. M. Gronkiewicz, E. A. Giuliano, K. Kuroki, F. Bunyak, A. Sharma, L. B. C. Teixeira, C. W. Hamm, and R. R. Mohan

Development of a novel in vivo corneal fibrosis model in the dog

Experimental Eye Research, Volume 143, pgs. 75-88, 2016

eye, biomedical, image analysis

Abstract, Bibtex, PlainText, URL, DOI, Google Scholar
#151: M. Kristan, J. Matas, A. Leonardis, M. Felsberg, .., R. Pelapur, K. Palaniappan, F. Bunyak, M. Poostchi, S. Yao, and K. Gao

The Visual Object Tracking VOT2015 challenge results

IEEE International Conference on Computer Vision Workshops (ICCVW) - Visual Object Tracking Challenge (VOT), 2015

wami, tracking, fmv, features, motion, image analysis

Abstract, Bibtex, PlainText, PDF, URL, DOI, Google Scholar
#150: R. Viguier, C. C. Lin, H. AliAkbarpour, F. Bunyak, S. Pankanti, G. Seetharaman, and K. Palaniappan

Automatic video content summarization using geospatial mosaics of aerial imagery

IEEE International Symposium on Multimedia (ISM), pgs. 5pp, 2015

video summarization, mosaicing, geospatial

Abstract, Bibtex, PlainText, PDF, URL, DOI, Google Scholar
#148: R. Viguier, C. C. Lin, K. Swaminathan, A. Vega, A. Buyuktosunoglu, S. Pankanti, P. Bose, H. Akbarpour, F. Bunyak, K. Palaniappan, and G. Seetharaman

Resilient mobile cognition: Algorithms, innovations, and architectures

IEEE International Conference on Computer Design (ICCD), pgs. 4pp, 2015

video summarization, mosaicing, geospatial, mobile, cognition

Abstract, Bibtex, PlainText, PDF, URL, Google Scholar
#145: A. Haridas, F. Bunyak, and K. Palaniappan

Interactive segmentation relabeling for classification of whole-slide histopathology imagery

IEEE Int. Symposium on Computer-Based Medical Systems (CBMS), pgs. 84-87, 2015

visualization, big data, biomedical, histopathology

Abstract, Bibtex, PlainText, PDF, URL, DOI, Google Scholar
#149: F. Bunyak, A. Hafiane, Z. Al-Milagi, I. Ersoy, A. Haridas, and K. Palaniappan

A segmentation-based multi-scale framework for the classification of epithelial and stromal tissues in H&E images

Proc. IEEE International Conference on Bioinformatics and Biomedicine (BIBM), pgs. 450-453, 2015

biomedical, histopathology, segmentation, classification

Abstract, Bibtex, PlainText, PDF, URL, Google Scholar
#146: S. Thutupalli, M. Sun, F. Bunyak, K. Palaniappan, and J. W. Shaevitz

Directional reversals enable Myxococcus xanthus cells to produce collective one-dimensional streams during fruiting-body formation

Journal of The Royal Society Interface, Volume 12, pgs. 20150049, 2015

biomedical, cell tracking, microscopy

Abstract, Bibtex, PlainText, PDF, URL, DOI, Google Scholar
#139: M. Sun, J. Huang, F. Bunyak, K. Gumpper, G. De, M. Sermersheim, G. Liu, P.-H. Lin, K. Palaniappan, and J. Ma

Superresolution microscope image reconstruction by spatiotemporal object decomposition and association: application in resolving t-tubule structure in skeletal muscle

Optics Express, Volume 22, pgs. 12160-12176, 2014

biomedical, image analysis

Abstract, Bibtex, PlainText, PDF, URL, DOI, Google Scholar
#138: Z. Hong, Z. Sun, M. Li, Z. Li, F. Bunyak, I. Ersoy, J. P. Trzeciakowski, M. C. Staiculescu, M. Jin, L. Martinez-Lemus, M. A. Hill, K. Palaniappan, and G. A. Meininger

Vasoactive agonists exert dynamic and coordinated effects on vascular smooth muscle cell elasticity, cytoskeletal remodelling and adhesion

The Journal of Physiology, Volume 592, pgs. 1249-1266, 2014

biomedical, vascular

Abstract, Bibtex, PlainText, PDF, URL, DOI, Google Scholar
#135: R. Pelapur, V. B. S. Prasath, F. Bunyak, O. V. Glinskii, V. V. Glinsky, V. H. Huxley, and K. Palaniappan

Multi-focus image fusion using epifluorescence microscopy for robust vascular segmentation

36th IEEE Engineering in Medicine and Biology Society Conf. (EMBC), pgs. 4735-4738, 2014

multifocus, image fusion, vasculature, biomedical

Abstract, Bibtex, PlainText, PDF, PubMed, DOI, Google Scholar
#133: R. Wang, F. Bunyak, G. Seetharaman, and K. Palaniappan

Static and moving object detection using flux tensor with split Gaussian models

Proc. of IEEE CVPR Workshop on Change Detection, 2014

ftsg, flux tensor, split gaussian, change detection

Abstract, Bibtex, PlainText, PDF, URL, DOI, Google Scholar
#127: V. B. S. Prasath, O. Haddad, F. Bunyak, O. Glinskii, V. Glinsky, V. Huxley, and K. Palaniappan

Robust filtering based segmentation and analysis of dura mater vessel laminae using epiflourescence microscopy

35th IEEE Engineering in Medicine and Biology Society Conf. (EMBC), pgs. 6055-6058, 2013

segmentation, image enhancement, vasculature, biomedical

Abstract, Bibtex, PlainText, PDF, Google Scholar
#130: Z. Hong, I. Ersoy, M. Sun, F. Bunyak, P. Hampel, Z. Hong, Z. Sun, Z. Li, I. Levitan, G. A. Meininger, and K. Palaniappan

Influence of membrane cholesterol and substrate elasticity on endothelial cell spreading behavior

J. Biomedical Material Research Part A, 2013

cell segmentation, active contours, high content, biomedical

Abstract, Bibtex, PlainText, PDF, PubMed, DOI, Google Scholar
#126: R. Pelapur, F. Bunyak, G. Seetharaman, and K. Palaniappan

Vehicle detection and orientation estimation using the Radon transform

Proc. SPIE Conf. Geospatial InfoFusion III (Defense, Security and Sensing: Sensor Data and Information Exploitation), Volume 8747, pgs. 87470I, 2013

wami, tracking, fmv, motion, dod

Abstract, Bibtex, PlainText, PDF, DOI, Google Scholar
#125: M. Poostchi, F. Bunyak, and K. Palaniappan

Feature selection for appearance-based vehicle tracking in geospatial video

Proc. SPIE Conf. Geospatial InfoFusion III (Defense, Security and Sensing: Sensor Data and Information Exploitation), Volume 8747, pgs. 87470G, 2013

wami, tracking, fmv, features, motion, dod

Abstract, Bibtex, PlainText, PDF, DOI, Google Scholar
#106: M. Poostchi, K. Palaniappan, F. Bunyak, M. Becchi, and G. Seetharaman

Efficient GPU implementation of the integral histogram

Lecture Notes in Computer Science (ACCV Workshop on Developer-Centered Computer Vision), Volume 7728, pgs. 266--278, 2012

parallelization, gpu, tracking, fmv, motion, features, dod

Abstract, Bibtex, PlainText, PDF, Google Scholar
#118: I. Ersoy, F. Bunyak, J. Higgins, and K. Palaniappan

Coupled edge profile geodesic active contours for red blood cell flow analysis

IEEE Int. Symposium on Biomedical Imaging (ISBI), 2012

cell segmentation, level set active contours, red blood cells, cell tracking, biomedical

Abstract, Bibtex, PlainText, PDF, URL, DOI, Google Scholar
#117: S. Candemir, K. Palaniappan, F. Bunyak, and G. Seetharaman

Feature fusion using ranking for object tracking in aerial imagery

Proc. SPIE Conf. Geospatial InfoFusion II (Defense, Security and Sensing: Sensor Data and Information Exploitation), Volume 8396, 2012

wami, tracking, fmv, features, motion, fusion, dod

Abstract, Bibtex, PlainText, PDF, DOI, Google Scholar
#116: A. Chowdhury, A. Paul, F. Bunyak, D. Cornelison, and K. Palaniappan

Semi-automated tracking of muscle satellite cells in brightfield microscopy video

IEEE Int. Conf. Image Processing, 2012

cell detection, cell tracking, particle filters, image enhancement, biomedical

Abstract, Bibtex, PlainText, PDF, DOI, Google Scholar
#113: I. Ersoy, F. Bunyak, K. Palaniappan, and J. Peng

HEp-2 Cell Classification in IIF Images Using ShareBoost

Int. Conf. Pattern Recognition, 2012

cell detection, cell classification, features, texture, machine learning, data mining, biomedical

Abstract, Bibtex, PlainText, PDF, URL, Google Scholar
#112: R. Pelapur, S. Candemir, F. Bunyak, M. Poostchi, G. Seetharaman, and K. Palaniappan

Persistent target tracking using likelihood fusion in wide-area and full motion video sequences

15th Int. Conf. Information Fusion, pgs. 2420--2427, 2012

wami, tracking, fmv, motion, features, fusion, dod

Abstract, Bibtex, PlainText, PDF, URL, Google Scholar
#111: V. B. S. Prasath, F. Bunyak, P. Dale, S. R. Frazier, and K. Palaniappan

Segmentation of breast cancer tissue microarrays for computer-aided diagnosis in pathology

IEEE Healthcare Innovation Conference, 2012

histopathology, active contours, classification, features, texture, machine learning, data mining, biomedical

Abstract, Bibtex, PlainText, PDF, Google Scholar
#108: S. Candemir, K. Palaniappan, F. Bunyak, G. Seetharaman, and R. Rao

Feature prominence-based weighting scheme for video tracking

8th Indian Conference on Computer Vision, Graphics and Image Processing, 2012

wami, tracking, fmv, motion, features, fusion, dod

Abstract, Bibtex, PlainText, PDF, DOI, Google Scholar
#107: M. Poostchi, K. Palaniappan, F. Bunyak, M. Becchi, and G. Seetharaman

Realtime motion detection based on the spatio-temporal median filter using GPU integral histograms

8th Indian Conference on Computer Vision, Graphics and Image Processing, 2012

parallelization, gpu, tracking, fmv, motion, features, dod

Abstract, Bibtex, PlainText, PDF, DOI, Google Scholar
#103: F. Bunyak, A. Hafiane, and K. Palaniappan

Histopathology tissue segmentation by combining fuzzy clustering with multiphase vector level sets

Software Tools and Algorithms for Biological Systems, Springer, pgs. 413--424, 2011

histopathology, active contours, classification, features, texture, machine learning, data mining, biomedical

Abstract, Bibtex, PlainText, PDF, URL, DOI, Google Scholar
#100: A. Haridas, R. Pelapur, J. Fraser, F. Bunyak, and K. Palaniappan

Visualization of automated and manual trajectories in wide-area motion imagery

15th Int. Conf. Information Visualization, pgs. 288--293, 2011

visualization, big data, wami, tracking, fmv, features, motion, dod

Abstract, Bibtex, PlainText, PDF, URL, DOI, Google Scholar
#97: K. Palaniappan, F. Bunyak, P. Kumar, I. Ersoy, S. Jaeger, K. Ganguli, A. Haridas, J. Fraser, R. Rao, and G. Seetharaman

Efficient feature extraction and likelihood fusion for vehicle tracking in low frame rate airborne video

13th Int. Conf. Information Fusion, 2010

wami, tracking, fmv, motion, features, fusion, dod

Abstract, Bibtex, PlainText, PDF, URL, DOI, Google Scholar
#92: F. Bunyak, K. Palaniappan, V. Chagin, and M. C. Cardoso

Cell segmentation in time-lapse fluorescence microscopy with temporally varying sub-cellular fusion protein patterns

31st IEEE Engineering in Medicine and Biology Society Conf. (EMBC), pgs. 1--5, 2009

cell detection, cell segmentation, cell tracking, features, texture, biomedical

Abstract, Bibtex, PlainText, PDF, URL, DOI, Google Scholar
#91: F. Bunyak and K. Palaniappan

Level set-based fast multi-phase graph partitioning active contours using constant memory

Lecture Notes in Computer Science (ACIVS), Volume 5807, pgs. 145--155, 2009

detection, segmentation, active contours, motion, classification

Abstract, Bibtex, PlainText, PDF, URL, DOI, Google Scholar
#81: I. Ersoy, F. Bunyak, V. Chagin, M. C. Cardoso, and K. Palaniappan

Segmentation and classification of cell cycle phases in fluorescence imaging

Lecture Notes in Computer Science (MICCAI), Volume 5762, pgs. 617--624, 2009

cell detection, cell segmentation, cell classification, features, texture, machine learning, data mining, biomedical

Abstract, Bibtex, PlainText, PDF, PubMed, DOI, Google Scholar
#80: K. Palaniappan, F. Bunyak, S. Nath, and J. Goffeney

Parallel processing strategies for cell motility and shape analysis

High-Throughput Image Reconstruction and Analysis, Artech House Publishers, pgs. 39--85, 2009

parallelization, gpu, cell detection, cell segmentation, cell tracking, machine learning, biomedical

Abstract, Bibtex, PlainText, PDF, Google Scholar
#88: F. Bunyak and K. Palaniappan

Efficient segmentation using feature-based graph partitioning active contours

12th IEEE Int. Conf. Computer Vision, pgs. 873--880, 2009

detection, segmentation, active contours, motion, classification

Abstract, Bibtex, PlainText, PDF, URL, DOI, Google Scholar
#85: A. Hafiane, F. Bunyak, and K. Palaniappan

Evaluation of level set-based histology image segmentation using geometric region criteria

IEEE Int. Symposium on Biomedical Imaging (ISBI), 2009

histopathology, active contours, classification, segmentation, features, texture, biomedical

Bibtex, PlainText, PDF, URL, DOI, Google Scholar
#79: I. Ersoy, F. Bunyak, M. A. Mackey, and K. Palaniappan

Cell segmentation using Hessian-based detection and contour evolution with directional derivatives

IEEE Int. Conf. Image Processing, pgs. 1804--1807, 2008

cell segmentation, cell detection, active contours, features, biomedical

Abstract, Bibtex, PlainText, PDF, URL, DOI, Google Scholar
#78: A. Hafiane, F. Bunyak, and K. Palaniappan

Fuzzy clustering and active contours for histopathology image segmentation and nuclei detection

Lecture Notes in Computer Science (ACIVS), Volume 5259, pgs. 903--914, 2008

histopathology, active contours, classification, segmentation, features, texture, biomedical

Abstract, Bibtex, PlainText, PDF, URL, DOI, Google Scholar
#67: I. Ersoy, F. Bunyak, K. Palaniappan, M. Sun, and G. Forgacs

Cell spreading analysis with directed edge profile-guided level set active contours

Lecture Notes in Computer Science (MICCAI), Volume 5241, pgs. 376--383, 2008

cell segmentation, active contours, high content, biomedical

Abstract, Bibtex, PlainText, PDF, PubMed, DOI, Google Scholar
#73: A. Hafiane, F. Bunyak, and K. Palaniappan

Clustering initiated multiphase active contours and robust separation of nuclei groups for tissue segmentation

IEEE Int. Conf. Pattern Recognition, pgs. Online, 2008

histopathology, active contours, classification, segmentation, features, biomedical

Abstract, Bibtex, PlainText, PDF, URL, DOI, Google Scholar
#71: F. Bunyak, K. Palaniappan, O. Glinskii, V. Glinskii, V. Glinsky, and V. Huxley

Epifluorescence-based quantitative microvasculature remodeling using geodesic level-sets and shape-based evolution

30th IEEE Engineering in Medicine and Biology Society Conf. (EMBC), pgs. 3134--3137, 2008

segmentation, image enhancement, active contours, vasculature, biomedical

Abstract, Bibtex, PlainText, PDF, URL, DOI, Google Scholar
#69: A. Hafiane, F. Bunyak, and K. Palaniappan

Level-set-based histology image segmentation with region-based comparison

MICCAI Workshop MIAAB, pgs. Online, 2008

histopathology, active contours, classification, features, texture, data mining, biomedical

Abstract, Bibtex, PlainText, PDF, URL, DOI, Google Scholar
#65: F. Bunyak, K. Palaniappan, S. K. Nath, and G. Seetharaman

Flux tensor constrained geodesic active contours with sensor fusion for persistent object tracking

J. Multimedia, Volume 2, pgs. 20--33, 2007

motion, fusion, tracking, active contours, visual events, features

Abstract, Bibtex, PlainText, PDF, URL, Google Scholar
#63: S. K. Nath, K. Palaniappan, and F. Bunyak

Accurate spatial neighborhood relationships for arbitrarily-shaped objects using Hamilton-Jacobi GVD

Lecture Notes in Computer Science (SCIA), Volume 4522, pgs. 421--431, 2007

cell segmentation, segmentation, active contours, data mining

Abstract, Bibtex, PlainText, PDF, DOI, Google Scholar
#62: F. Bunyak, K. Palaniappan, S. K. Nath, and G. Seetharaman

Geodesic active contour based fusion of visible and infrared video for persistent object tracking

8th IEEE Workshop Applications of Computer Vision (WACV 2007), pgs. Online, 2007

motion, fusion, tracking, active contours, visual events, features

Abstract, Bibtex, PlainText, PDF, DOI, Google Scholar
#60: F. Bunyak, K. Palaniappan, S. K. Nath, T. I. Baskin, and G. Dong

Quantitative cell motility for in vitro wound healing using level set-based active contour tracking

IEEE Int. Symposium on Biomedical Imaging (ISBI), pgs. 1040--1043, 2006

cell detection, cell segmentation, active contours, cell tracking, biomedical

Abstract, Bibtex, PlainText, PDF, DOI, Google Scholar
#59: S. K. Nath, F. Bunyak, and K. Palaniappan

Robust tracking of migrating cells using four-color level set segmentation

Lecture Notes in Computer Science (ACIVS), Volume 4179, pgs. 920--932, 2006

cell detection, cell segmentation, active contours, cell tracking, biomedical

Abstract, Bibtex, PlainText, PDF, DOI, Google Scholar
#57: S. K. Nath, K. Palaniappan, and F. Bunyak

Cell segmentation using coupled level sets and graph-vertex coloring

Lecture Notes in Computer Science (MICCAI), Volume 4190, pgs. 101--108, 2006

cell detection, cell segmentation, active contours, cell tracking, biomedical

Abstract, Bibtex, PlainText, PDF, DOI, Google Scholar