55 publications with the keyword "biomedical"


#181: Y. M. Kassim, V. B. S. Prasath, O. V. Glinskii, V. V. Glinsky, V. H. Huxley, and K. Palaniappan

Microvasculature segmentation of arterioles using deep CNN

IEEE International Conference on Image Processing (ICIP), 2017

deep learning, segmentation, vasculature, biomedical

Abstract, Bibtex, PlainText, URL, Google Scholar
#176: Z. Liang, S. Jaeger, G. Thoma, J. Huang, P. Guo, A. Powell, K. Silamut, I. Ersoy, M. Poostchi, K. Palaniappan, and R. J. Maude

CNN - Based Image Analysis for Malaria Diagnosis

Proc. IEEE International Conference on Bioinformatics and Biomedicine (BIBM), 2016

deep learning, malaira, cells, classification, biomedical

Abstract, Bibtex, PlainText, Google Scholar
#171: V. B. S. Prasath, Y. M. Kassim, Z. A. Oraibi, J.-B. Guiriec, A. Hafiane, G. Seetharaman, and K. Palaniappan

HEp-2 cell classification and segmentation using motif texture patterns and spatial features with random forests

Proc. IEEE International Conference on Pattern Recognition (ICPR), 2016

hep-2 cell classification, cell segmentation, texture features, motif patterns, random forests, segmentation, biomedical

Abstract, Bibtex, PlainText, URL, Google Scholar
#165: Y. M. Kassim, V. B. S. Prasath, O. Glinskii, V. Glinsky, V. Huxley, and K. Palaniappan

Confocal vessel structure segmentation with optimized feature bank and random forests

Proc. IEEE Applied Imagery Pattern Recognition (AIPR), 2016

random forest, segmentation, vasculature, confocal, biomedical

Abstract, Bibtex, PlainText, Google Scholar
#156: J. Kwon, A. Wang, D. J. Burke, H. E. Boudreau, K. J. Lekstrom, A. Korzeniowska, R. Sugamata, Y.-S. Kim, L. Yi, I. Ersoy, S. Jaeger, K. Palaniappan, D. R. Ambruso, S. H. Jackson, and T. L. Leto

Peroxiredoxin 6 (Prdx6) supports NADPH oxidase1 (Nox1)-based superoxide generation and cell migration

Free Radical Biology and Medicine, 2016

cell migration, biomedical

Abstract, Bibtex, PlainText, PDF, DOI, Google Scholar
#158: S. Meena, V. B. S. Prasath, Y. M. Kassim, R. J. Maude, O. Glinskii, V. Glinsky, V. Huxley, and K. Palaniappan

Multiquadric spline-based interactive segmentation of vascular networks

38th IEEE Engineering in Medicine and Biology Society Conf. (EMBC), pgs. 5913-5916, 2016

interactive, segmentation, vasculature, biomedical

Abstract, Bibtex, PlainText, PDF, DOI, Google Scholar
#157: Y. M. Kassim, V. B. S. Prasath, R. Pelapur, O. Glinskii, R. J. Maude, V. Glinsky, V. Huxley, and K. Palaniappan

Random forests for dura mater microvasculature segmentation using epifluorescence images

38th IEEE Engineering in Medicine and Biology Society Conf. (EMBC), pgs. 2901-2904, 2016

random forest, segmentation, vasculature, biomedical

Abstract, Bibtex, PlainText, PDF, DOI, Google Scholar
#152: M. Poostchi, I. Ersoy, A. Bansal, K. Palaniappan, S. Antani, S. Jaeger, and G. Thoma

Image analysis of blood slides for automatic malaria diagnosis

NIH-IEEE Strategic Conference on Healthcare Innovations and Point-of-Care Technologies for Precision Medicine (HI-POCT), 2015

malaria, biomedical, image analysis

Abstract, Bibtex, PlainText, PDF, URL, Google Scholar
#145: A. Haridas, F. Bunyak, and K. Palaniappan

Interactive segmentation relabeling for classification of whole-slide histopathology imagery

IEEE Int. Symposium on Computer-Based Medical Systems (CBMS), pgs. 84-87, 2015

visualization, big data, biomedical, histopathology

Abstract, Bibtex, PlainText, PDF, URL, DOI, Google Scholar
#149: F. Bunyak, A. Hafiane, Z. Al-Milagi, I. Ersoy, A. Haridas, and K. Palaniappan

A segmentation-based multi-scale framework for the classification of epithelial and stromal tissues in H&E images

Proc. IEEE International Conference on Bioinformatics and Biomedicine (BIBM), pgs. 450-453, 2015

biomedical, histopathology, segmentation, classification

Abstract, Bibtex, PlainText, PDF, URL, Google Scholar
#146: S. Thutupalli, M. Sun, F. Bunyak, K. Palaniappan, and J. W. Shaevitz

Directional reversals enable Myxococcus xanthus cells to produce collective one-dimensional streams during fruiting-body formation

Journal of The Royal Society Interface, Volume 12, pgs. 20150049, 2015

biomedical, cell tracking, microscopy

Abstract, Bibtex, PlainText, PDF, URL, DOI, Google Scholar
#142: V. B. S. Prasath, R. Pelapur, O. V. Glinskii, V. V. Glinsky, V. H. Huxley, and K. Palaniappan

Multiscale tensor anisotropic filtering of fluorescence microscopy for denoising microvasculature

IEEE Int. Symposium on Biomedical Imaging (ISBI), pgs. 540-543, 2015

anisotropic diffusion, denoising, vasculature, biomedical

Abstract, Bibtex, PlainText, PDF, URL, DOI, Google Scholar
#140: J. C. Moreno, V. B. S. Prasath, H. Proenca, and K. Palaniappan

Fast and globally convex multiphase active contours for brain MRI segmentation

Computer Vision and Image Understanding, Volume 125, pgs. 237-250, 2014

segmentation, active contours, globally convex, biomedical

Abstract, Bibtex, PlainText, PDF, URL, DOI, Google Scholar
#139: M. Sun, J. Huang, F. Bunyak, K. Gumpper, G. De, M. Sermersheim, G. Liu, P.-H. Lin, K. Palaniappan, and J. Ma

Superresolution microscope image reconstruction by spatiotemporal object decomposition and association: application in resolving t-tubule structure in skeletal muscle

Optics Express, Volume 22, pgs. 12160-12176, 2014

biomedical, image analysis

Abstract, Bibtex, PlainText, PDF, URL, DOI, Google Scholar
#138: Z. Hong, Z. Sun, M. Li, Z. Li, F. Bunyak, I. Ersoy, J. P. Trzeciakowski, M. C. Staiculescu, M. Jin, L. Martinez-Lemus, M. A. Hill, K. Palaniappan, and G. A. Meininger

Vasoactive agonists exert dynamic and coordinated effects on vascular smooth muscle cell elasticity, cytoskeletal remodelling and adhesion

The Journal of Physiology, Volume 592, pgs. 1249-1266, 2014

biomedical, vascular

Abstract, Bibtex, PlainText, PDF, URL, DOI, Google Scholar
#135: R. Pelapur, V. B. S. Prasath, F. Bunyak, O. V. Glinskii, V. V. Glinsky, V. H. Huxley, and K. Palaniappan

Multi-focus image fusion using epifluorescence microscopy for robust vascular segmentation

36th IEEE Engineering in Medicine and Biology Society Conf. (EMBC), pgs. 4735-4738, 2014

multifocus, image fusion, vasculature, biomedical

Abstract, Bibtex, PlainText, PDF, PubMed, DOI, Google Scholar
#132: S. Candemir, S. Jaeger, K. Palaniappan, J. P. Musco, R. Singh, Z. Xue, A. Karargyris, S. Antani, G. Thoma, and C. J. McDonald

Lung segmentation in chest radiographs using anatomical atlases with non-rigid registration

IEEE Trans. Medical Imaging, Volume 33, pgs. 577-590, 2014

segmentation, graph methods, chest x-ray, cbir, registration, biomedical

Abstract, Bibtex, PlainText, PDF, DOI, Google Scholar
#131: S. Jaeger, A. Karargyris, S. Candemir, L. Folio, J. Siegelman, F. Callaghan, Z. Xue, K. Palaniappan, R. Singh, S. Antani, G. Thoma, Y.-X. Wang, P.-X. Lu, and C. J. McDonald

Automatic tuberculosis screening using chest radiographs

IEEE Trans. Medical Imaging, Volume 33, pgs. 233-245, 2014

classification, features, machine learning, data mining, biomedical

Abstract, Bibtex, PlainText, PDF, DOI, Google Scholar
#129: S. Candemir, K. Palaniappan, and Y. S. Akgul

Multi-class regularization parameter learning for graph cut image segmentation

IEEE Int. Symposium on Biomedical Imaging (ISBI), 2013

segmentation, graph methods, chest x-ray, machine learning, biomedical

Abstract, Bibtex, PlainText, PDF, DOI, Google Scholar
#127: V. B. S. Prasath, O. Haddad, F. Bunyak, O. Glinskii, V. Glinsky, V. Huxley, and K. Palaniappan

Robust filtering based segmentation and analysis of dura mater vessel laminae using epiflourescence microscopy

35th IEEE Engineering in Medicine and Biology Society Conf. (EMBC), pgs. 6055-6058, 2013

segmentation, image enhancement, vasculature, biomedical

Abstract, Bibtex, PlainText, PDF, Google Scholar
#130: Z. Hong, I. Ersoy, M. Sun, F. Bunyak, P. Hampel, Z. Hong, Z. Sun, Z. Li, I. Levitan, G. A. Meininger, and K. Palaniappan

Influence of membrane cholesterol and substrate elasticity on endothelial cell spreading behavior

J. Biomedical Material Research Part A, 2013

cell segmentation, active contours, high content, biomedical

Abstract, Bibtex, PlainText, PDF, PubMed, DOI, Google Scholar
#124: J. Fraser, A. Haridas, G. Seetharaman, R. Rao, and K. Palaniappan

KOLAM: A cross-platform architecture for scalable visualization and tracking in wide-area motion imagery

Proc. SPIE Conf. Geospatial InfoFusion III (Defense, Security and Sensing: Sensor Data and Information Exploitation), Volume 8747, pgs. 87470N, 2013

visualization, big data, wami, tracking, fmv, features, motion, dod, biomedical

Abstract, Bibtex, PlainText, PDF, DOI, Google Scholar
#114: V. B. S. Prasath, I. Figueiredo, P. Figueiredo, and K. Palaniappan

Mucosal region detection and 3D reconstruction in wireless capsule endoscopy videos using active contours

34th IEEE Engineering in Medicine and Biology Society Conf. (EMBC), pgs. 4014--4017, 2012

cell detection, cell segmentation, cell tracking, active contours, red blood cells, biomedical

Abstract, Bibtex, PlainText, PDF, DOI, Google Scholar
#118: I. Ersoy, F. Bunyak, J. Higgins, and K. Palaniappan

Coupled edge profile geodesic active contours for red blood cell flow analysis

IEEE Int. Symposium on Biomedical Imaging (ISBI), 2012

cell segmentation, level set active contours, red blood cells, cell tracking, biomedical

Abstract, Bibtex, PlainText, PDF, URL, DOI, Google Scholar
#116: A. Chowdhury, A. Paul, F. Bunyak, D. Cornelison, and K. Palaniappan

Semi-automated tracking of muscle satellite cells in brightfield microscopy video

IEEE Int. Conf. Image Processing, 2012

cell detection, cell tracking, particle filters, image enhancement, biomedical

Abstract, Bibtex, PlainText, PDF, DOI, Google Scholar
#113: I. Ersoy, F. Bunyak, K. Palaniappan, and J. Peng

HEp-2 Cell Classification in IIF Images Using ShareBoost

Int. Conf. Pattern Recognition, 2012

cell detection, cell classification, features, texture, machine learning, data mining, biomedical

Abstract, Bibtex, PlainText, PDF, URL, Google Scholar
#111: V. B. S. Prasath, F. Bunyak, P. Dale, S. R. Frazier, and K. Palaniappan

Segmentation of breast cancer tissue microarrays for computer-aided diagnosis in pathology

IEEE Healthcare Innovation Conference, 2012

histopathology, active contours, classification, features, texture, machine learning, data mining, biomedical

Abstract, Bibtex, PlainText, PDF, Google Scholar
#110: S. Candemir, S. Jaeger, K. Palaniappan, S. Antani, and G. Thoma

Graph cut based automatic lung boundary detection in chest radiographs

IEEE Healthcare Innovation Conference, 2012

registration, segmentation, graph methods, anatomical, biomedical

Abstract, Bibtex, PlainText, PDF, Google Scholar
#103: F. Bunyak, A. Hafiane, and K. Palaniappan

Histopathology tissue segmentation by combining fuzzy clustering with multiphase vector level sets

Software Tools and Algorithms for Biological Systems, Springer, pgs. 413--424, 2011

histopathology, active contours, classification, features, texture, machine learning, data mining, biomedical

Abstract, Bibtex, PlainText, PDF, URL, DOI, Google Scholar
#96: S. Jaeger, K. Palaniappan, C. S. Casas-Delucchi, and M. C. Cardoso

Classification of cell cycle phases in 3D confocal microscopy using PCNA and chromocenter features

7th Indian Conference on Computer Vision, Graphics and Image Processing, 2010

cell detection, cell segmentation, cell classification, cell tracking, features, texture, machine learning, data mining, biomedical

Abstract, Bibtex, PlainText, PDF, URL, DOI, Google Scholar
#94: S. Jaeger, K. Palaniappan, C. S. Casas-Delucchi, and M. C. Cardoso

Dual channel colocalization for cell cycle analysis using 3D confocal microscopy

IEEE Int. Conf. Pattern Recognition, 2010

cell detection, cell segmentation, cell classification, features, texture, machine learning, data mining, biomedical

Abstract, Bibtex, PlainText, PDF, URL, DOI, Google Scholar
#92: F. Bunyak, K. Palaniappan, V. Chagin, and M. C. Cardoso

Cell segmentation in time-lapse fluorescence microscopy with temporally varying sub-cellular fusion protein patterns

31st IEEE Engineering in Medicine and Biology Society Conf. (EMBC), pgs. 1--5, 2009

cell detection, cell segmentation, cell tracking, features, texture, biomedical

Abstract, Bibtex, PlainText, PDF, URL, DOI, Google Scholar
#81: I. Ersoy, F. Bunyak, V. Chagin, M. C. Cardoso, and K. Palaniappan

Segmentation and classification of cell cycle phases in fluorescence imaging

Lecture Notes in Computer Science (MICCAI), Volume 5762, pgs. 617--624, 2009

cell detection, cell segmentation, cell classification, features, texture, machine learning, data mining, biomedical

Abstract, Bibtex, PlainText, PDF, PubMed, DOI, Google Scholar
#80: K. Palaniappan, F. Bunyak, S. Nath, and J. Goffeney

Parallel processing strategies for cell motility and shape analysis

High-Throughput Image Reconstruction and Analysis, Artech House Publishers, pgs. 39--85, 2009

parallelization, gpu, cell detection, cell segmentation, cell tracking, machine learning, biomedical

Abstract, Bibtex, PlainText, PDF, Google Scholar
#89: A. Mosig, S. Jaeger, W. Chaofeng, I. Ersoy, S. K. Nath, K. Palaniappan, and S. Chen

Tracking cells in live cell imaging videos using topological alignments

Algorithms in Molecular Biology, Volume 4, pgs. 10p, 2009

cell detection, cell segmentation, cell tracking, features, biomedical

Abstract, Bibtex, PlainText, PDF, URL, DOI, Google Scholar
#85: A. Hafiane, F. Bunyak, and K. Palaniappan

Evaluation of level set-based histology image segmentation using geometric region criteria

IEEE Int. Symposium on Biomedical Imaging (ISBI), 2009

histopathology, active contours, classification, segmentation, features, texture, biomedical

Bibtex, PlainText, PDF, URL, DOI, Google Scholar
#79: I. Ersoy, F. Bunyak, M. A. Mackey, and K. Palaniappan

Cell segmentation using Hessian-based detection and contour evolution with directional derivatives

IEEE Int. Conf. Image Processing, pgs. 1804--1807, 2008

cell segmentation, cell detection, active contours, features, biomedical

Abstract, Bibtex, PlainText, PDF, URL, DOI, Google Scholar
#78: A. Hafiane, F. Bunyak, and K. Palaniappan

Fuzzy clustering and active contours for histopathology image segmentation and nuclei detection

Lecture Notes in Computer Science (ACIVS), Volume 5259, pgs. 903--914, 2008

histopathology, active contours, classification, segmentation, features, texture, biomedical

Abstract, Bibtex, PlainText, PDF, URL, DOI, Google Scholar
#67: I. Ersoy, F. Bunyak, K. Palaniappan, M. Sun, and G. Forgacs

Cell spreading analysis with directed edge profile-guided level set active contours

Lecture Notes in Computer Science (MICCAI), Volume 5241, pgs. 376--383, 2008

cell segmentation, active contours, high content, biomedical

Abstract, Bibtex, PlainText, PDF, PubMed, DOI, Google Scholar
#73: A. Hafiane, F. Bunyak, and K. Palaniappan

Clustering initiated multiphase active contours and robust separation of nuclei groups for tissue segmentation

IEEE Int. Conf. Pattern Recognition, pgs. Online, 2008

histopathology, active contours, classification, segmentation, features, biomedical

Abstract, Bibtex, PlainText, PDF, URL, DOI, Google Scholar
#71: F. Bunyak, K. Palaniappan, O. Glinskii, V. Glinskii, V. Glinsky, and V. Huxley

Epifluorescence-based quantitative microvasculature remodeling using geodesic level-sets and shape-based evolution

30th IEEE Engineering in Medicine and Biology Society Conf. (EMBC), pgs. 3134--3137, 2008

segmentation, image enhancement, active contours, vasculature, biomedical

Abstract, Bibtex, PlainText, PDF, URL, DOI, Google Scholar
#69: A. Hafiane, F. Bunyak, and K. Palaniappan

Level-set-based histology image segmentation with region-based comparison

MICCAI Workshop MIAAB, pgs. Online, 2008

histopathology, active contours, classification, features, texture, data mining, biomedical

Abstract, Bibtex, PlainText, PDF, URL, DOI, Google Scholar
#66: I. Ersoy and K. Palaniappan

Multi-feature contour evolution for automatic live cell segmentation in time lapse imagery

30th IEEE Engineering in Medicine and Biology Society Conf. (EMBC), pgs. 371--374, 2008

cell segmentation, active contours, cell tracking, high content, biomedical

Abstract, Bibtex, PlainText, PDF, PubMed, DOI, Google Scholar
#60: F. Bunyak, K. Palaniappan, S. K. Nath, T. I. Baskin, and G. Dong

Quantitative cell motility for in vitro wound healing using level set-based active contour tracking

IEEE Int. Symposium on Biomedical Imaging (ISBI), pgs. 1040--1043, 2006

cell detection, cell segmentation, active contours, cell tracking, biomedical

Abstract, Bibtex, PlainText, PDF, DOI, Google Scholar
#59: S. K. Nath, F. Bunyak, and K. Palaniappan

Robust tracking of migrating cells using four-color level set segmentation

Lecture Notes in Computer Science (ACIVS), Volume 4179, pgs. 920--932, 2006

cell detection, cell segmentation, active contours, cell tracking, biomedical

Abstract, Bibtex, PlainText, PDF, DOI, Google Scholar
#57: S. K. Nath, K. Palaniappan, and F. Bunyak

Cell segmentation using coupled level sets and graph-vertex coloring

Lecture Notes in Computer Science (MICCAI), Volume 4190, pgs. 101--108, 2006

cell detection, cell segmentation, active contours, cell tracking, biomedical

Abstract, Bibtex, PlainText, PDF, DOI, Google Scholar
#56: G. Dong, T. I. Baskin, and K. Palaniappan

Motion flow estimation from image sequences with applications to biological growth and motility

IEEE Int. Conf. Image Processing, pgs. 1245--1248, 2006

cell detection, cell segmentation, active contours, cell tracking, biomedical

Abstract, Bibtex, PlainText, PDF, DOI, Google Scholar
#51: K. Palaniappan, H. S. Jiang, and T. I. Baskin

Non-rigid motion estimation using the robust tensor method

IEEE CVPR Workshop on Articulated and Nonrigid Motion, Volume 1, pgs. 25--33, 2004

detection, segmentation, features, tracking, convex relaxation, plants, biomedical

Abstract, Bibtex, PlainText, PDF, URL, DOI, Google Scholar
#49: C. Weele, H. Jiang, K. K. Palaniappan, V. B. Ivanov, K. Palaniappan, and T. I. Baskin

A new algorithm for computational image analysis of deformable motion at high spatial and temporal resolution applied to root growth: Roughly uniform elongation in the meristem and also, after an abrupt acceleration, in the elongation zone

Plant Physiology, Volume 132, pgs. 1138--1148, 2003

detection, segmentation, features, tracking, plants, biomedical

Abstract, Bibtex, PlainText, PDF, URL, DOI, Google Scholar
#48: H. S. Jiang, K. Palaniappan, and T. I. Baskin

A combined matching and tensor method to obtain high fidelity velocity fields from image sequences of the non-rigid motion of the growth of a plant root

IASTED Int. Conf. on Biomedical Engineering, pgs. 159--165, 2003

detection, segmentation, features, tracking, convex relaxation, plants, biomedical

Abstract, Bibtex, PlainText, URL, Google Scholar
#34: J. Vass, K. Palaniappan, and X. Zhuang

Three dimensional wavelet coding of volumetric imagery

J. Robotics and Automation, Volume 15, pgs. 34--47, 2000

image enhancement, image compression, image analysis, visualization, biomedical

Bibtex, PlainText, Google Scholar
#26: J. Vass, J. Yao, K. Palaniappan, and X. Zhuang

Three dimensional wavelet coding of magnetic resonance images

IASTED Computer Graphics and Imaging, pgs. 128--133, 1999

image compression, image analysis, video coding, biomedical

Abstract, Bibtex, PlainText, PDF, Google Scholar
#6: K. Palaniappan, T. S. Huang, and H. Lee

Comparison of image matching criteria for obtaining projections

IEEE Int. Conf. Image Processing, pgs. 112--117, 1989

segmentation, features, image analysis, biomedical

Bibtex, PlainText, Google Scholar
#5: K. Palaniappan, T. S. Huang, and H. Lee

Automated reading of DNA autoradiogram images using lane profiling methods

IEEE Int. Workshop on Industrial Applications of Machine Intelligence and Vision, pgs. 360--367, 1989

segmentation, features, image analysis, bioinformatics, biomedical

Abstract, Bibtex, PlainText, PDF, URL, Google Scholar
#4: K. Palaniappan and T. S. Huang

Image analysis for DNA sequencing

SPIE Proceedings on Biomedical Image Processing II, Volume 1450, pgs. 186--197, 1989

segmentation, features, image analysis, bioinformatics, biomedical

Abstract, Bibtex, PlainText, PDF, URL, DOI, Google Scholar