Y. Y. Wang, A. S.Hamad, K. Palaniappan, T. E.Lever, and F. Bunyak. LARNet-STC: Spatio-temporal orthogonal region selection network for laryngeal closure detection in endoscopy videos. Computers in Biology and Medicine, Elsevier, pages 105339, February 2022.

K. Nouduri, K. Gao, J. Fraser, S. Yao, H. AliAkbarpour, F. Bunyak, and K. Palaniappan. Deep realistic novel view generation for city-scale aerial images. IEEE International Conference on Pattern Recognition (ICPR), pages 7, January 2021.

N. P. Nguyen, Y. Yoo, A. Chekkoury, E. Eibenberger, T. J. Re, J. Das, A. Balachandran, Y. W. Lui, P. C. Sanelli, T. J. Schroeppel, U. Bodanapally, S. Nicolaou, T. A. W. White, F. Bunyak, D. Comaniciu, and E. Gibson. Brain midline shift detection and quantification by a cascaded deep network pipeline on non-contrast computed tomography scans. Proceedings of the IEEE/CVF International Conference on Computer Vision, pages 487--495, 2021.

I. Gubins, M. L. Chaillet, G. van der Schot, M. C. Trueba, R. C. Veltkamp, F. Förster, X. Wang, D. Kihara, E. Moebel, N. P. Nguyen, T. White, F. Bunyak, G. Papoulias, S. Gerolymatos, E. I. Zacharaki, K. Moustakas, X. Zeng, S. Liu, M. Xu, Y. Wang, C. Chen, X. Cui, and F. Zhang. SHREC 2021: classification in cryo-electron tomograms. Eurographics Workshop on 3D Object Retrieval, The Eurographics Association, 2021.

T. E. Lever, A. M. Kloepper, I. Deninger, A. Hamad, B. L. Hopewell, A. K. Ovaitt, M. Szewczyk, F. Bunyak, B. Zitsch, B. Blake, and others. Advancing laryngeal adductor reflex testing beyond sensory threshold detection. Dysphagia, Springer, pages 1--21, 2021.

M. M. H. Shuvo, Y. M. Kassim, F. Bunyak, O. V. Glinskii, L. Xie, V. V. Glinsky, V. H. Huxley, M. M. Thakkar, and K. Palaniappan. Multi-focus Image Fusion for Confocal Microscopy Using U-Net Regression Map. International Conference on Pattern Recognition (ICPR), pages 4317-4323, 2021.

T. Hajilounezhad, R. Bao, K. Palaniappan, F. Bunyak, P. Calyam, and M. R. Maschmann. Predicting carbon nanotube forest attributes and mechanical properties using simulated images and deep learning. npj Computational Materials, Nature Publishing Group, volume 7, issue 1, pages 1--11, 2021.

G. Rahmon, F. Bunyak, G. Seetharaman, and K. Palaniappan. Motion U-Net: Multi-cue Encoder-Decoder Network for Motion Segmentation. 2020 25th International Conference on Pattern Recognition (ICPR), pages 8125-8132, 2021.

Y. Y. Wang, O. V. Glinskii, F. Bunyak, and K. Palaniappan. Ensemble of Deep Learning Cascades for Segmentation of Blood Vessels in Confocal Microscopy Images. 5OTH ANNUAL APPLIED IMAGERY PATTERN RECOGNITION WORKSHOP, 2021.

Y. Y. Wang, K. Gao, A. Hamad, B. McCarthy, A. M. Kloepper, T. E. Lever, and F. Bunyak. Multi-Modal and Multi-Scale Oral Diadochokinesis Analysis using Deep Learning. 5OTH ANNUAL APPLIED IMAGERY PATTERN RECOGNITION WORKSHOP, 2021.

G. Koerner, R. Surya, K. Palaniappan, P. Calyam, F. Bunyak, and M. R. Maschmann. In-situ scanning electron microscope chemical vapor deposition as a platform for nanomanufacturing insights. ASME International Mechanical Engineering Congress and Exposition, volume 85567, pages V02BT02A052, 2021.

R. Bao, N. Al-Shakarji, F. Bunyak, and K. Palaniappan. DMNet: Dual-stream marker guided deep network for dense cell segmentation and lineage tracking. IEEE International Conference on Computer Vision Workshops (ICCVW), pages 3354-3363, 2021.

N. R. Sinha, P. K. Balne, F. Bunyak, A. C. Hofmann, R. R. Lim, R. R. Mohan, and S. S. Chaurasia. Collagen matrix perturbations in corneal stroma of Ossabaw mini pigs with type 2 diabetes. Molecular vision, Emory University, volume 27, pages 666, 2021.

J. M. Robil, K. Gao, C. M. Neighbors, M. Boeding, F. M. Carland, F. Bunyak, and P. McSteen. grasviq: an image analysis framework for automatically quantifying vein number and morphology in grass leaves. The Plant Journal, Wiley Online Library, volume 107, issue 2, pages 629--648, 2021.

N. P. Nguyen, I. Ersoy, J. Gotberg, F. Bunyak, and T. A. White. DRPnet: automated particle picking in cryo-electron micrographs using deep regression. BMC Bioinformatics, Springer, volume 22, issue 1, pages 1--28, 2021.

N. Al-Shakarji, K. Gao, F. Bunyak, H. Aliakbarpour, E. Blasch, P. Narayaran, G. Seetharaman, and K. Palaniappan. Impact of georegistration accuracy on wide area motion imagery object detection and tracking. IEEE International Conference on Information Fusion (FUSION), pages 1-8, 2021.

K. Gao, H. Aliakbarpour, J. Fraser, K. Nouduri, F. Bunyak, R. Massaro, G. Seetharaman, and K. Palaniappan. Local feature performance evaluation for Structure-from-Motion and multi-view stereo using simulated city-scale aerial imagery. IEEE Sensors Journal, volume 21, issue 10, pages  11615 - 11627, December 2020.

Y. Y. Wang, A. S. Hamad, T. E. Lever, and F. Bunyak. Orthogonal Region Selection Network for Laryngeal Closure Detection in Laryngoscopy Videos. 2020 42nd Annual International Conference of the IEEE Engineering in Medicine & Biology Society (EMBC), pages 2167-2172, July 2020.

G. Yolcu, I. Oztel, S. Kazan, C. Oz, and F. Bunyak. Deep learning-based face analysis system for monitoring customer interest. Journal of Ambient Intelligence and Humanized Computing, Springer, volume 11, issue 1, pages 237--248, 2020.

L. Welby, H. Caudill, G. Yitsege, A. Hamad, F. Bunyak, I. E. Zohn, T. Maynard, A.-S. LaMantia, D. Mendelowitz, and T. E. Lever. Persistent feeding and swallowing deficits in a mouse model of 22q11. 2 deletion syndrome. Frontiers in Neurology, Frontiers, pages 4, 2020.

M. M. Haney, A. Hamad, H. G. Woldu, M. Ciucci, N. Nichols, F. Bunyak, and T. E. Lever. Recurrent laryngeal nerve transection in mice results in translational upper airway dysfunction. Journal of Comparative Neurology, Wiley Online Library, volume 528, issue 4, pages 574--596, 2020.

O. Glinskii, V. Huxley, L. Xie, F. Bunyak, K. Palaniappan, and V. Glinsky. Microvascular Pachymeningeal Lymphatic Structures: Association with Blood Vessels and Cranial Bones. The FASEB Journal, Wiley Online Library, volume 34, issue S1, pages 1--1, 2020.

D. E. Kharismawati, H. A. Akbarpour, R. Aktar, F. Bunyak, K. Palaniappan, and T. Kazic. CorNet: Unsupervised Deep Homography Estimation for Agricultural Aerial Imagery. European Conference on Computer Vision Workshops (ECCVW), Springer International Publishing, pages 400--417, 2020.

R. Aktar, V. H. Huxley, G. Guidoboni, H. AliAkbarpour, F. Bunyak, and K. Palaniappan. Mosaicing of Dynamic Mesentery Video with Gradient Blending. IEEE International Conference on Image Processing (ICIP), pages 563-567, 2020.

K. Nouduri, F. Bunyak, S. Yao, H. Aliakbarpour, S. Agarwal, R. Rao, and K. Palaniappan. Deep Learning Based Landmark Matching For Aerial Geolocalization. 2020 IEEE International Conference on Image Processing (ICIP), pages 1911-1915, 2020.

G. Rahmon, F. Bunyak, G. Seetharaman, and K. Palaniappan. Evaluation of Different Decision Fusion Mechanisms for Robust Moving Object Detection. 2020 IEEE Applied Imagery Pattern Recognition Workshop (AIPR), pages 1-7, 2020.

A. S. Hamad, Y. Y. Wang, T. E. Lever, and F. Bunyak. Ensemble of deep cascades for detection of laryngeal adductor reflex events in Endoscopy Videos. IEEE International Conference on Image Processing (ICIP), pages 300-304, 2020.

H. Fan, D. Du, L. Wen, P. Zhu, Q. Hu, H. Ling, M. Shah, J. Pan, A. Schumann, B. Dong, D. Stadler, D. Xu, F. Bunyak, G. Seetharaman, G. Liu, V. Haritha, P. S. Hrishikesh, J. Han, K. Palaniappan, K. Zhu, L. W. Sommer, L. Zhang, L. Shine, M. Yao, N. Al-Shakarji, S. Li, T. Sun, W. Sai, W. Yu, X. Wu, X. Hong, X. Wei, X. Zhao, Y. Zhao, Y. Gong, Y. Yao, Y. He, Z. Zhao, Z. Xie, Z. Yang, Z. Xu, Z. Luo, and Z. Duan. VisDrone-MOT2020: The vision meets drone multiple object tracking challenge results. European Conference on Computer Vision (ECCV), Springer International Publishing, pages 713--727, 2020.

N. Al-Shakarji, E. Ufuktepe, F. Bunyak, H. Aliakbarpour, G. Seetharaman, and K. Palaniappan. Semi-automatic system for rapid annotation of moving objects in surveillance videos using deep detection and multi-object tracking techniques. IEEE Applied Imagery Pattern Recognition Workshop (AIPR), pages 1-6, 2020.

D. E. Kharismawati, H. A. Akbarpour, R. Aktar, F. Bunyak, K. Palaniappan, and T. Kazic. CorNet: unsupervised deep homography estimation for agricultural aerial imagery. ECCV 2020 Workshops, Springer, Cham, volume LNCS 12540, 2020.

R. Aktar, D. E. Kharismawati, K. Palaniappan, H. Aliakbarpour, F. Bunyak, A. E. Stapleton, and T. Kazic. Robust mosaicking of maize fields from aerial imagery. Applications in Plant Sciences, volume 8, issue 8, pages e11387, 2020.

R. Aktar, V. H. Huxley, G. Guidoboni, H. AliAkbarpour, F. Bunyak, and K. Palaniappan. Mosaicing of dynamic mesentery video with gradient blending. IEEE International Conference on Image Processing (ICIP), pages 563--567, 2020.

O. V. Glinskii, V. H. Huxley, L. Xie, F. Bunyak, K. Palaniappan, and V. V. Glinsky. Complex non-sinus-associated pachymeningeal lymphatic structures: Interrelationship with blood microvasculature. Frontiers in physiology, Frontiers, volume 10, pages 1-8, October 2019.

G. Yolcu, I. Oztel, S. Kazan, C. Oz, K. Palaniappan, T. E. Lever, and F. Bunyak. Facial expression recognition for monitoring neurological disorders based on convolutional neural network. Multimedia Tools and Applications, Springer, volume 78, issue 22, pages 31581-31603, July 2019.

K. Palaniappan, F. Bunyak, and S. S. Chaurasia. Image analysis for ophthalmology: segmentation and quantification of retinal vascular systems. Ocular Fluid Dynamics, Springer, pages 543--580, 2019.

M. M. Haney, A. Hamad, E. Leary, F. Bunyak, and T. E. Lever. Automated quantification of vocal fold motion in a recurrent laryngeal nerve injury mouse model. The Laryngoscope, Wiley Online Library, volume 129, issue 7, pages E247--E254, 2019.

K. C. Banks, D. E. Stalla, F. E. Bunyak, T. A. White, L. G. Schultz, and E. A. Giuliano. Comparison of two cleaning and sterilization protocols of diamond burr tips used in debridement for canine superficial chronic corneal epithelial defects. Veterinary Ophthalmology, Wiley Online Library, volume 22, issue 5, pages 614--622, 2019.

A. Hamad, M. Haney, T. E. Lever, and F. Bunyak. Automated segmentation of the vocal folds in laryngeal endoscopy videos using deep convolutional regression networks. IEEE/CVF Conference on Computer Vision and Pattern Recognition Workshops (CVPRW), pages 140--148, 2019.

Y. Y. Wang, K. Gao, A. M. Kloepper, Y. Zhao, M. Kuruvilla-Dugdale, T. E. Lever, and F. Bunyak. DeepDDK: A deep learning based oral-diadochokinesis analysis software. IEEE EMBS International Conference on Biomedical & Health Informatics (BHI), pages 1--4, 2019.

L. Wen, P. Zhu, D. Du, X. Bian, H. Ling, Q. Hu, J. Zheng, T. Peng, X. Wang, Y. Zhang, L. Bo, H. Shi, R. Zhu, A. Jadhav, B. Dong, B. Lall, C. Liu, C. Zhang, D. Wang, F. Ni, F. Bunyak, G. Wang, G. Liu, G. Seetharaman, G. Li, H. Ardo, H. Zhang, H. Yu, H. Lu, J.-N. Hwang, J. Mu, J. Hu, K. Palaniappan, L. Chen, L. Ding, M. Lauer, M. Nilsson, N. M. Al-Shakarji, P. Mukherjee, Q. Huang, R. Laganiere, S. Chen, S. Pan, V. Kaushik, W. Shi, W. Tian, W. Li, X. Chen, X. Zhang, Y. Zhang, Y. Zhao, Y. Wang, Y. Song, Y. Yao, Z. Chen, Z. Xu, Z. Xiao, and Z. Tong. VisDrone-MOT2019: The vision meets drone multiple object tracking challenge results. Proceedings of the IEEE/CVF International Conference on Computer Vision Workshops (ICCVW), pages 189-198, 2019.

N. Al-Shakarji, F. Bunyak, H. Aliakbarpour, G. Seetharaman, and K. Palaniappan. Performance evaluation of semantic video compression using multi-cue object detection. IEEE Applied Imagery Pattern Recognition Workshop (AIPR), pages 1-8, 2019.

N. Al-Shakarji, F. Bunyak, H. AliAkbarpour, G. Seetharaman, and K. Palaniappan. Multi-cue vehicle detection for semantic video compression in georegistered aerial videos. Proceedings of the IEEE/CVF Conference on Computer Vision and Pattern Recognition Workshops (CVPRW), pages 56-65, 2019.

R. Aktar, H. Aliakbarpour, F. Bunyak, G. Seetharaman, and K. Palaniappan. Performance evaluation of feature descriptors for aerial imagery mosaicking. IEEE Applied Imagery Pattern Recognition Workshop (AIPR), IEEE, pages 1-7, October 2018.

F. Bunyak, N. Shiraishi, K. Palaniappan, T.  E. Lever, L. Avivi-Arber, and K. Takahashi. Development of semi-automatic procedure for detection and tracking of fiducial markers for orofacial kinematics during natural feeding. In Engineering in Medicine and Biology Society (EMBC), pages 580-583, July 2018.

R. Aktar, H. AliAkbarpour, F. Bunyak, T. Kazic, G. Seetharaman, and K. Palaniappan. Geospatial content summarization of UAV aerial imagery using mosaicking. International Society for Optics and Photonics, Geospatial Informatics, Motion Imagery, and Network Analytics VIII, volume 10645, pages 106450I, April 2018.

A. Bouix, N. Al-Shakarji, K. Gao, F. Bunyak, A. Chazot, A. Hafiane, and K. Palaniappan. Robust target tracking using adaptive color feature and likelihood fusion. International Society for Optics and Photonics, Geospatial Informatics, Motion Imagery, and Network Analytics VIII, volume 10645, pages 106450L, April 2018.

I. Oztel, G. Yolcu, I. Ersoy, T. A. White, and F. Bunyak. Deep learning approaches in electron microscopy imaging for mitochondria segmentation. International Journal of Data Mining and Bioinformatics, Inderscience Publishers (IEL), volume 21, issue 2, pages 91--106, 2018.

N. Akkaladevi, F. Bunyak, D. Stalla, T. A. White, and G. L. Hazelbauer. Flexible hinges in bacterial chemoreceptors. Journal of bacteriology, Am Soc Microbiol, volume 200, issue 5, pages e00593--17, 2018.

I. Oztel, G. Yolcu, C. Öz, S. Kazan, and F. Bunyak. iFER: facial expression recognition using automatically selected geometric eye and eyebrow features. Journal of Electronic Imaging, International Society for Optics and Photonics, volume 27, issue 2, pages 023003, 2018.

A. Hamad, I. Ersoy, and F. Bunyak. Improving nuclei classification performance in H\&E stained tissue images using fully convolutional regression network and convolutional neural network. 2018 IEEE Applied Imagery Pattern Recognition Workshop (AIPR), pages 1-6, 2018.

R. Zheng, L. Liu, S. Zhang, C. Zheng, F. Bunyak, R. Xu, B. Li, and M. Sun. Detection of exudates in fundus photographs with imbalanced learning using conditional generative adversarial network. Biomedical Optics Express, Optical Society of America, volume 9, issue 10, pages 4863--4878, 2018.

N. P. Nguyen, I. Ersoy, T. White, and F. Bunyak. Automated particle picking in cryo-electron micrographs using deep regression. IEEE International Conference on Bioinformatics and Biomedicine (BIBM), pages 2453--2460, 2018.

P. Zhu, L. Wen, D. Du, X. Bian, H. Ling, Q. Hu, H. Wu, Q. Nie, H. Cheng, C. Liu, X. Liu, W. Ma, L. Wang, A. Schumann, D. Wang, D. Ortego, E. Luna, E. Michail, E. Bochinski, F. Ni, F. Bunyak, G. Zhang, G. Seetharaman, G. Li, H. Yu, I. Kompatsiaris, J. Zhao, J. Gao, J. M. Martinez, J. C. S. Miguel, K. Palaniappan, K. Avgerinakis, L. Sommer, M. Lauer, M. Liu, N. M. Al-Shakarji, O. Acatay, P. Giannakeris, Q. Zhao, Q. Ma, Q. Huang, S. Vrochidis, T. Sikora, T. Senst, W. Song, W. Tian, W. Zhang, Y. Zhao, Y. Bai, Y. Wu, Y. Wang, Y. Li, Z. Pi, and Z. Ma. VisDrone-VDT2018: The vision meets drone video detection and tracking challenge results. Proceedings of the European Conference on Computer Vision (ECCV) Workshops, 2018.

S. Lyu, M.-C. Chang, D. Du, W. Li, Y. Wei, M. D. Coco, P. Carcagnì, A. Schumann, B. Munjal, D.-Q. Dang, D.-H. Choi, E. Bochinski, F. Galasso, F. Bunyak, G. Seetharaman, J.-W. Baek, J. T. Lee, K. Palaniappan, K.-T. Lim, K. Moon, K.-J. Kim, L. Sommer, M. Brandlmaier, M.-S. Kang, M. Jeon, N. M. Al-Shakarji, O. Acatay, P.-K. Kim, S. Amin, T. Sikora, T. Dinh, T. Senst, V.-G. Che, Y.-C. Lim, Y.-m. Song, and Y.-S. Chung. UA-DETRAC 2018: Report of AVSS2018 & IWT4S challenge on advanced traffic monitoring. IEEE International Conference on Advanced Video and Signal Based Surveillance (AVSS), pages 1-6, 2018.

N. Al-Shakarji, F. Bunyak, G. Seetharaman, and K. Palaniappan. Multi-object tracking cascade with multi-step data association and occlusion handling. IEEE International Conference on Advanced Video and Signal Based Surveillance (AVSS), IEEE, pages 1-6, 2018.

N. Al-Shakarji, F. Bunyak, G. Seetharaman, and K. Palaniappan. Robust multi-object tracking for wide area motion imagery. IEEE Applied Imagery Pattern Recognition Workshop (AIPR), pages 1-5, 2018.

N. M. Al-Shakarji, F. Bunyak, G. Seetharaman, and K. Palaniappan. A hybrid local and global multi-object tracking with semantic spatial and appearance modules. International Society for Optics and Photonics  , volume 10645, pages 106450B, 2018.

G. Yolcu, I. Oztel, S. Kazan, C. Oz, K. Palaniappan, T. Lever, and F. Bunyak. Deep learning-based facial expression recognition for monitoring neurological disorders. EEE International Conference on Bioinformatics and Biomedicine (BIBM) , pages 1652-1657, November 2017.

K. Gao, T. White, K. Palaniappan, M. Warmund, and F. Bunyak. MUSeed: A mobile image analysis application for plant seed morphometry. IEEE International Conference on Image Processing, pages 2826-2830, September 2017.

N. Al-Shakarji, F. Bunyak, G. Seetharaman, and K. Palaniappan. Vehicle tracking in wide area motion imagery using KC-LoFT multi-feature discriminative modeling. IEEE Applied Imagery Pattern Recognition Workshop (AIPR), pages 1-6, 2017.

N. Al-Shakarji, F. Bunyak, G. Seetharaman, and K. Palaniappan. Robust multi-object tracking with semantic color correlation. IEEE International Conference on Advanced Video and Signal Based Surveillance (AVSS), pages 1-7, 2017.

S. Lyui, M. Chang, D. Du, L. Wen, H. Qi, Y. Li, Y. Wei, L. K., T. Hu, M. DelCoco, P. Carcagnì, D. Anisimov, E. Bochinski, F. Galasso, F. Bunyak, G. Han, H. Ye, H. Wang, K. Palaniappan, K. Ozcan, L. W. L. Wang, M. Lauer, N. Watcharapinchai, N. Song, N. Al-Shakarji, S. Wang, S. Amin, S. Rujikietgumjorn, T. Khanova, T. Sikora, T. Kutschbach, V. Eiselein, W. Tian, X. Xue, X. Yu, Y. Lu, Y. Zheng, Y. Huang, and Y. Zhang. UA-DETRAC 2017: Report of AVSS2017 & IWT4S challenge on advanced traffic monitoring. IEEE AVSS International Workshop on Traffic and Street Surveillance for Safety and Security (IWT4S), pages 1-7, 2017.

L. Alzubaidi, I. Ersoy, D. Shin, and F. Bunyak. Nucleus Detection in H&E Images with Fully Convolutional Regression Networks. Proc. First International Workshop on Deep Learning for Pattern Recognition (DLPR), December 2016.

K. Palaniappan, M. Poostchi, H. Aliakbarpour, R. Viguier, J. Fraser, F. Bunyak, A. Basharat, S. Suddarth, E. Blasch, R. Rao, and G. Seetharaman. Moving object detection for vehicle tracking in wide area motion imagery using 4D filtering. Proc. IEEE International Conference on Pattern Recognition (ICPR), December 2016.

G. Seetharaman, K. Palaniappan, F. Bunyak, and R. Wang. System and method for static and moving object detection. US Patent 9,454,819, September 2016.

M. Poostchi, H. Aliakbarpour, R. Viguier, F. Bunyak, K. Palaniappan, and G. Seetharaman. Semantic depth map fusion for moving vehicle detection in aerial video. Proc. IEEE Conference on Computer Vision and Pattern Recognition (CVPR) Workshops, pages 32-40, July 2016.

M. Kristan, A. Leonardis, J. Matas, M. Felsberg, R. Pflugfelder, L. Cehovin, T. Vojir, G. Häger, A. Lukezic, G. Fernandez, A. Gupta, A. Petrosino, A. Memarmoghadam, A. Garcia-Martin, A. S. Montero, A. Vedaldi, A. Robinson, A. J. Ma, A. Varfolomieiev, A. Alatan, A. Erdem, B. Ghanem, B. Liu, B. Han, B. Martinez, C.-M. Chang, C. Xu, C. Sun, D. Kim, D. Chen, D. Du, D. Mishra, D.-Y. Yeung, E. Gundogdu, E. Erdem, F. Khan, F. Porikli, F. Zhao, F. Bunyak, F. Battistone, G. Zhu, G. Roffo, G. R. K. S. Subrahmanyam, G. Bastos, G. Seetharaman, H. Medeiros, H. Li, H. Qi, H. Bischof, H. Possegger, H. Lu, H. Lee, H. Nam, H. J. Chang, I. Drummond, J. Valmadre, J.-c. Jeong, J.-i. Cho, J.-Y. Lee, J. Zhu, J. Feng, J. Gao, J. Y. Choi, J. Xiao, J.-W. Kim, J. Jeong, J. F. Henriques, J. Lang, J. Choi, J. M. Martinez, J. Xing, J. Gao, K. Palaniappan, K. Lebeda, K. Gao, K. Mikolajczyk, L. Qin, L. Wang, L. Wen, L. Bertinetto, M. K. Rapuru, M. Poostchi, M. Maresca, M. Danelljan, M. Mueller, M. Zhang, M. Arens, M. Valstar, M. Tang, M. Baek, M. H. Khan, N. Wang, N. Fan, N. Al-Shakarji, O. Miksik, O. Akin, P. Moallem, P. Senna, P. H. S. Torr, P. C. Yuen, Q. Huang, R. Martin-Nieto, R. Pelapur, R. Bowden, R. Laganière, R. Stolkin, R. Walsh, S. B. Krah, S. Li, S. Zhang, S. Yao, S. Hadfield, S. Melzi, S. Lyu, S. Li, S. Becker, S. Golodetz, S. Kakanuru, S. Choi, T. Hu, T. Mauthner, T. Zhang, T. Pridmore, V. Santopietro, W. Hu, W. Li, W. Hübner, X. Lan, X. Wang, X. Li, Y. Li, Y. Demiris, Y. Wang, Y. Qi, Z. Yuan, Z. Cai, Z. Xu, Z. He, and Z. Chi. The visual object tracking VOT2016 challenge results. European Conference on Computer Vision Workshop (ECCVW), pages 777--823, 2016.

M. Felsberg, M. Kristan, J. Matas, A. Leonardis, R. Pflugfelder, G. Häger, A. Berg, A. Eldesokey, J. Ahlberg, L. Cehovin, T. Vojir, A. Lukezic, G. Fernandez, A. Petrosino, A. Garcia-Martin, A. S. Montero, A. Varfolomieiev, A. Erdem, B. Han, C.-M. Chang, D. Du, E. Erdem, F. S. Khan, F. Porikli, F. Zhao, F. Bunyak, F. Battistone, G. Zhu, G. Seetharaman, H. Li, H. Qi, H. Bischof, H. Possegger, H. Nam, J. Valmadre, J. Zhu, J. Feng, J. Lang, J. M. Martinez, K. Palaniappan, K. Lebeda, K. Gao, K. Mikolajczyk, L. Wen, L. Bertinetto, M. Poostchi, M. Maresca, M. Danelljan, M. Arens, M. Tang, M. Baek, N. Fan, N. Al-Shakarji, O. Miksik, O. Akin, P. H. S. Torr, Q. Huang, R. Martin-Nieto, R. Pelapur, R. Bowden, R. Laganière, S. B. Krah, S. Li, S. Yao, S. Hadfield, S. Lyu, S. Becker, S. Golodetz, T. Hu, T. Mauthner, V. Santopietro, W. Li, W. Hübner, X. Li, Y. Li, Z. Xu, and Z. He. The thermal infrared visual object tracking VOT-TIR2016 challenge results. European Conference on Computer Vision Workshop (ECCVW), pages 824--849, 2016.

Z. Al-Milaji, I. Ersoy, K. Palaniappan, and F. Bunyak. Hybrid Deep Learning Framework for the Classification of Epithelial and Stromal Tissues in H&E Images. Proc. First International Workshop on Deep Learning for Pattern Recognition (DLPR), 2016.

N. Al-Shakarji, F. Bunyak, and K. Palaniappan. CS-LOFT: Color and scale adaptive tracking using Bhattacharyya distance and max pooling consistency. IEEE Applied Imagery Pattern Recognition Workshop (AIPR), 2016.

K. M. Gronkiewicz, E. A. Giuliano, K. Kuroki, F. Bunyak, A. Sharma, L. B. C. Teixeira, C. W. Hamm, and R. R. Mohan. Development of a novel in vivo corneal fibrosis model in the dog. Experimental Eye Research, volume 143, pages 75-88, 2016.

M. Kristan, J. Matas, A. Leonardis, M. Felsberg, .., R. Pelapur, K. Palaniappan, F. Bunyak, M. Poostchi, S. Yao, and K. Gao. The Visual Object Tracking VOT2015 challenge results. IEEE International Conference on Computer Vision Workshops (ICCVW), pages 564-586, December 2015.

R. Viguier, C. C. Lin, H. AliAkbarpour, F. Bunyak, S. Pankanti, G. Seetharaman, and K. Palaniappan. Automatic video content summarization using geospatial mosaics of aerial imagery. IEEE International Symposium on Multimedia (ISM), pages 5pp, December 2015.

R. Viguier, C. C. Lin, K. Swaminathan, A. Vega, A. Buyuktosunoglu, S. Pankanti, P. Bose, H. Akbarpour, F. Bunyak, K. Palaniappan, and G. Seetharaman. Resilient mobile cognition: Algorithms, innovations, and architectures. IEEE International Conference on  Computer Design (ICCD), pages 4pp, October 2015.

A. Haridas, F. Bunyak, and K. Palaniappan. Interactive segmentation relabeling for classification of whole-slide histopathology imagery. IEEE Int. Symposium on Computer-Based Medical Systems (CBMS), pages 84-87, June 2015.

F. Bunyak, A. Hafiane, Z. Al-Milagi, I. Ersoy, A. Haridas, and K. Palaniappan. A segmentation-based multi-scale framework for the classification of epithelial and stromal tissues in H&E images. Proc. IEEE International Conference on Bioinformatics and Biomedicine (BIBM), pages 450-453, 2015.

S. Thutupalli, M. Sun, F. Bunyak, K. Palaniappan, and J. W. Shaevitz. Directional reversals enable Myxococcus xanthus cells to produce collective one-dimensional streams during fruiting-body formation. Journal of The Royal Society Interface, volume 12, issue 109, pages 20150049, 2015.

M. Sun, J. Huang, F. Bunyak, K. Gumpper, G. De, M. Sermersheim, G. Liu, P.-H. Lin, K. Palaniappan, and J. Ma. Superresolution microscope image reconstruction by spatiotemporal object decomposition and association: application in resolving t-tubule structure in skeletal muscle. Optics Express, volume 22, issue 10, pages 12160-12176, May 2014.

Z. Hong, Z. Sun, M. Li, Z. Li, F. Bunyak, I. Ersoy, J. P. Trzeciakowski, M. C. Staiculescu, M. Jin, L. Martinez-Lemus, M. A. Hill, K. Palaniappan, and G. A. Meininger. Vasoactive agonists exert dynamic and coordinated effects on vascular smooth muscle cell elasticity, cytoskeletal remodelling and adhesion. The Journal of Physiology, volume 592, pages 1249-1266, March 2014.

R. Pelapur, V. B. S. Prasath, F. Bunyak, O. V. Glinskii, V. V. Glinsky, V. H. Huxley, and K. Palaniappan. Multi-focus image fusion using epifluorescence microscopy for robust vascular segmentation. 36th IEEE Engineering in Medicine and Biology Society Conf. (EMBC), pages 4735-4738, 2014.

R. Wang, F. Bunyak, G. Seetharaman, and K. Palaniappan. Static and moving object detection using flux tensor with split Gaussian models. Proc. of IEEE CVPR Workshop on Change Detection, 2014.

V. B. S. Prasath, O. Haddad, F. Bunyak, O. Glinskii, V. Glinsky, V. Huxley, and K. Palaniappan. Robust filtering based segmentation and analysis of dura mater vessel laminae using epiflourescence microscopy. 35th IEEE Engineering in Medicine and Biology Society Conf. (EMBC), pages 6055-6058, 2013.

Z. Hong, I. Ersoy, M. Sun, F. Bunyak, P. Hampel, Z. Hong, Z. Sun, Z. Li, I. Levitan, G. A. Meininger, and K. Palaniappan. Influence of membrane cholesterol and substrate elasticity on endothelial cell spreading behavior. J. Biomedical Material Research Part A, 2013.

R. Pelapur, F. Bunyak, G. Seetharaman, and K. Palaniappan. Vehicle detection and orientation estimation using the Radon transform. Proc. SPIE Conf. Geospatial InfoFusion III (Defense, Security and Sensing: Sensor Data and Information Exploitation), volume 8747, pages 87470I, 2013.

M. Poostchi, F. Bunyak, and K. Palaniappan. Feature selection for appearance-based vehicle tracking in geospatial video. Proc. SPIE Conf. Geospatial InfoFusion III (Defense, Security and Sensing: Sensor Data and Information Exploitation), volume 8747, pages 87470G, 2013.

M. Poostchi, K. Palaniappan, F. Bunyak, M. Becchi, and G. Seetharaman. Efficient GPU implementation of the integral histogram. Lecture Notes in Computer Science (ACCV Workshop on Developer-Centered Computer Vision), volume 7728, issue Part I, pages 266--278, 2012.

I. Ersoy, F. Bunyak, J. Higgins, and K. Palaniappan. Coupled edge profile geodesic active contours for red blood cell flow analysis. IEEE Int. Symposium on Biomedical Imaging (ISBI), 2012.

S. Candemir, K. Palaniappan, F. Bunyak, and G. Seetharaman. Feature fusion using ranking for object tracking in aerial imagery. Proc. SPIE Conf. Geospatial InfoFusion II (Defense, Security and Sensing: Sensor Data and Information Exploitation), volume 8396, 2012.

A. Chowdhury, A. Paul, F. Bunyak, D. Cornelison, and K. Palaniappan. Semi-automated tracking of muscle satellite cells in brightfield microscopy video. IEEE Int. Conf. Image Processing, 2012.

I. Ersoy, F. Bunyak, K. Palaniappan, and J. Peng. HEp-2 Cell Classification in IIF Images Using ShareBoost. Int. Conf. Pattern Recognition, 2012.

R. Pelapur, S. Candemir, F. Bunyak, M. Poostchi, G. Seetharaman, and K. Palaniappan. Persistent target tracking using likelihood fusion in wide-area and full motion video sequences. 15th Int. Conf. Information Fusion, pages 2420--2427, 2012.

V. B. S. Prasath, F. Bunyak, P. Dale, S. R. Frazier, and K. Palaniappan. Segmentation of breast cancer tissue microarrays for computer-aided diagnosis in pathology. IEEE Healthcare Innovation Conference, 2012.

S. Candemir, K. Palaniappan, F. Bunyak, G. Seetharaman, and R. Rao. Feature prominence-based weighting scheme for video tracking. 8th Indian Conference on Computer Vision, Graphics and Image Processing, 2012.

M. Poostchi, K. Palaniappan, F. Bunyak, M. Becchi, and G. Seetharaman. Realtime motion detection based on the spatio-temporal median filter using GPU integral histograms. 8th Indian Conference on Computer Vision, Graphics and Image Processing, 2012.

F. Bunyak, A. Hafiane, and K. Palaniappan. Histopathology tissue segmentation by combining fuzzy clustering with multiphase vector level sets. Software Tools and Algorithms for Biological Systems, Springer, pages 413--424, 2011.

A. Haridas, R. Pelapur, J. Fraser, F. Bunyak, and K. Palaniappan. Visualization of automated and manual trajectories in wide-area motion imagery. 15th Int. Conf. Information Visualization, pages 288--293, 2011.

K. Palaniappan, F. Bunyak, P. Kumar, I. Ersoy, S. Jaeger, K. Ganguli, A. Haridas, J. Fraser, R. Rao, and G. Seetharaman. Efficient feature extraction and likelihood fusion for vehicle tracking in low frame rate airborne video. 13th Int. Conf. Information Fusion, 2010.

F. Bunyak, K. Palaniappan, V. Chagin, and M. C. Cardoso. Cell segmentation in time-lapse fluorescence microscopy with temporally varying sub-cellular fusion protein patterns. 31st IEEE Engineering in Medicine and Biology Society Conf. (EMBC), pages 1--5, 2009.

F. Bunyak and K. Palaniappan. Level set-based fast multi-phase graph partitioning active contours using constant memory. Lecture Notes in Computer Science (ACIVS), volume 5807, pages 145--155, 2009.

I. Ersoy, F. Bunyak, V. Chagin, M. C. Cardoso, and K. Palaniappan. Segmentation and classification of cell cycle phases in fluorescence imaging. Lecture Notes in Computer Science (MICCAI), volume 5762, pages 617--624, 2009.

K. Palaniappan, F. Bunyak, S. Nath, and J. Goffeney. Parallel processing strategies for cell motility and shape analysis. High-Throughput Image Reconstruction and Analysis, Artech House Publishers, pages 39--85, 2009.

F. Bunyak and K. Palaniappan. Efficient segmentation using feature-based graph partitioning active contours. 12th IEEE Int. Conf. Computer Vision, pages 873--880, 2009.

A. Hafiane, F. Bunyak, and K. Palaniappan. Evaluation of level set-based histology image segmentation using geometric region criteria. IEEE Int. Symposium on Biomedical Imaging (ISBI), 2009.

I. Ersoy, F. Bunyak, M. A. Mackey, and K. Palaniappan. Cell segmentation using Hessian-based detection and contour evolution with directional derivatives. IEEE Int. Conf. Image Processing, pages 1804--1807, 2008.

A. Hafiane, F. Bunyak, and K. Palaniappan. Fuzzy clustering and active contours for histopathology image segmentation and nuclei detection. Lecture Notes in Computer Science (ACIVS), volume 5259, pages 903--914, 2008.

I. Ersoy, F. Bunyak, K. Palaniappan, M. Sun, and G. Forgacs. Cell spreading analysis with directed edge profile-guided level set active contours. Lecture Notes in Computer Science (MICCAI), volume 5241, pages 376--383, 2008.

A. Hafiane, F. Bunyak, and K. Palaniappan. Clustering initiated multiphase active contours and robust separation of nuclei groups for tissue segmentation. IEEE Int. Conf. Pattern Recognition, pages Online, 2008.

F. Bunyak, K. Palaniappan, O. Glinskii, V. Glinskii, V. Glinsky, and V. Huxley. Epifluorescence-based quantitative microvasculature remodeling using geodesic level-sets and shape-based evolution. 30th IEEE Engineering in Medicine and Biology Society Conf. (EMBC), pages 3134--3137, 2008.

A. Hafiane, F. Bunyak, and K. Palaniappan. Level-set-based histology image segmentation with region-based comparison. MICCAI Workshop MIAAB, pages Online, 2008.

F. Bunyak, K. Palaniappan, S. K. Nath, and G. Seetharaman. Flux tensor constrained geodesic active contours with sensor fusion for persistent object tracking. J. Multimedia, volume 2, issue 4, pages 20--33, August 2007.

S. K. Nath, K. Palaniappan, and F. Bunyak. Accurate spatial neighborhood relationships for arbitrarily-shaped objects using Hamilton-Jacobi GVD. Lecture Notes in Computer Science (SCIA), volume 4522, pages 421--431, 2007.

F. Bunyak, K. Palaniappan, S. K. Nath, and G. Seetharaman. Geodesic active contour based fusion of visible and infrared video for persistent object tracking. 8th IEEE Workshop Applications of Computer Vision (WACV 2007), pages Online, 2007.

F. Bunyak, K. Palaniappan, S. K. Nath, T. I. Baskin, and G. Dong. Quantitative cell motility for in vitro wound healing using level set-based active contour tracking. IEEE Int. Symposium on Biomedical Imaging (ISBI), pages 1040--1043, April 2006.

S. K. Nath, F. Bunyak, and K. Palaniappan. Robust tracking of migrating cells using four-color level set segmentation. Lecture Notes in Computer Science (ACIVS), Springer-Verlag, volume 4179, pages 920--932, 2006.

S. K. Nath, K. Palaniappan, and F. Bunyak. Cell segmentation using coupled level sets and graph-vertex coloring. Lecture Notes in Computer Science (MICCAI), volume 4190, pages 101--108, 2006.