Computational Imaging & VisAnalysis

#340: N. P. Nguyen, I. Ersoy, J. Gotberg, F. Bunyak, and T. A. White

DRPnet: automated particle picking in cryo-electron micrographs using deep regression

BMC Bioinformatics, Volume 22, pgs. 1--28, 2021

@article{Nguyen:BMC2021,
  author = "N. P. Nguyen and I. Ersoy and J. Gotberg and F. Bunyak and T. A. White",
  title = "DRPnet: automated particle picking in cryo-electron micrographs using deep regression",
  year = 2021,
  journal = "BMC Bioinformatics",
  publisher = "Springer",
  volume = 22,
  number = 1,
  pages = "1--28"
}

#283: M. Poostchi, I. Ersoy, K. McMenamin, E. Gordon, N. Palaniappan, S. Pierce, R. J. Maude, A. Bansal, P. Srinivasan, L. Miller, K. Palaniappan, G. Thoma, and S. Jaeger

Malaria parasite detection and cell counting for human and mouse using thin blood smear microscopy

Journal of Medical Imaging, Volume 5, pgs. 1-14, 2018

Abstract, Bibtex, PlainText, PDF, URL, DOI, Google Scholar

@article{2018a,
  author = "M. Poostchi and I. Ersoy and K. McMenamin and E. Gordon and N. Palaniappan and S. Pierce and R. J. Maude and A. Bansal and P. Srinivasan and L. Miller and K. Palaniappan and G. Thoma and S. Jaeger",
  title = "Malaria parasite detection and cell counting for human and mouse using thin blood smear microscopy",
  year = 2018,
  journal = "Journal of Medical Imaging",
  publisher = "International Society for Optics and Photonics",
  volume = 5,
  number = 4,
  pages = "1-14",
  month = "Dec",
  doi = "10.1117/1.JMI.5.4.044506",
  url = "https://scholar.google.com/scholar?hl=en&as_sdt=0%2C26&q=Malaria+parasite+detection+and+cell+counting+for+human+and+mouse+using+thin+blood+smear+microscopy&btnG="
}

M. Poostchi, I. Ersoy, K. McMenamin, E. Gordon, N. Palaniappan, S. Pierce, R. J. Maude, A. Bansal, P. Srinivasan, L. Miller, K. Palaniappan, G. Thoma, and S. Jaeger. Malaria parasite detection and cell counting for human and mouse using thin blood smear microscopy. Journal of Medical Imaging, International Society for Optics and Photonics, volume 5, issue 4, pages 1-14, December 2018.

#272: I. Oztel, G. Yolcu, I. Ersoy, T. A. White, and F. Bunyak

Deep learning approaches in electron microscopy imaging for mitochondria segmentation

International Journal of Data Mining and Bioinformatics, Volume 21, pgs. 91--106, 2018

Bibtex, PlainText, Google Scholar

@article{Oztel:IJDM2018,
  author = "I. Oztel and G. Yolcu and I. Ersoy and T. A. White and F. Bunyak",
  title = "Deep learning approaches in electron microscopy imaging for mitochondria segmentation",
  year = 2018,
  journal = "International Journal of Data Mining and Bioinformatics",
  publisher = "Inderscience Publishers (IEL)",
  volume = 21,
  number = 2,
  pages = "91--106"
}

#269: A. Hamad, I. Ersoy, and F. Bunyak

Improving nuclei classification performance in H\&E stained tissue images using fully convolutional regression network and convolutional neural network

2018 IEEE Applied Imagery Pattern Recognition Workshop (AIPR), pgs. 1-6, 2018

Bibtex, PlainText, DOI, Google Scholar

@inproceedings{Hamad:AIPR2018,
  author = "A. Hamad and I. Ersoy and F. Bunyak",
  title = "Improving nuclei classification performance in H\&E stained tissue images using fully convolutional regression network and convolutional neural network",
  year = 2018,
  booktitle = "2018 IEEE Applied Imagery Pattern Recognition Workshop (AIPR)",
  pages = "1-6",
  doi = "10.1109/AIPR.2018.8707397"
}

#267: N. P. Nguyen, I. Ersoy, T. White, and F. Bunyak

Automated particle picking in cryo-electron micrographs using deep regression

IEEE International Conference on Bioinformatics and Biomedicine (BIBM), pgs. 2453--2460, 2018

Bibtex, PlainText, Google Scholar

@inproceedings{Nguyen:BIBM2018,
  author = "N. P. Nguyen and I. Ersoy and T. White and F. Bunyak",
  title = "Automated particle picking in cryo-electron micrographs using deep regression",
  year = 2018,
  booktitle = "IEEE International Conference on Bioinformatics and Biomedicine (BIBM)",
  pages = "2453--2460"
}

#258: Z. Al-Milajia, I. Ersoy, A. Hafiane, K. Palaniappan, and F.Bunyak

Integrating segmentation with deep learning for enhanced classification of epithelial and stromal tissues in H&E images

Pattern Recognition Letters, 2017

Bibtex, PlainText, PDF, URL, DOI, Google Scholar

@article{2017a,
  author = "Z. Al-Milajia and I. Ersoy and A. Hafiane and K. Palaniappan and F.Bunyak",
  title = "Integrating segmentation with deep learning for enhanced classification of epithelial and stromal tissues in H&E images",
  year = 2017,
  journal = "Pattern Recognition Letters",
  month = "Sep",
  doi = "10.1016/j.patrec.2017.09.015",
  url = "https://reader.elsevier.com/reader/sd/DCEFD43DFFC270D9ABABF80CCADCB9947FF58D0788EC39D68C850BA858FC72609EFED312575ECE955CF85CA37CBDA90A"
}

#241: Z. Liang, S. Jaeger, G. Thoma, J. Huang, P. Guo, A. Powell, K. Silamut, I. Ersoy, M. Poostchi, K. Palaniappan, and R. J. Maude

CNN - Based Image Analysis for Malaria Diagnosis

Proc. IEEE International Conference on Bioinformatics and Biomedicine (BIBM), 2016

deep learning, malaira, cells, classification, biomedical

Abstract, Bibtex, PlainText, Google Scholar

@inproceedings{2016a,
  author = "Z. Liang and S. Jaeger and G. Thoma and J. Huang and P. Guo and A. Powell and K. Silamut and I. Ersoy and M. Poostchi and K. Palaniappan and R. J. Maude",
  title = "CNN - Based Image Analysis for Malaria Diagnosis",
  year = 2016,
  journal = "Proc. IEEE International Conference on Bioinformatics and Biomedicine (BIBM)",
  month = "Dec",
  keywords = "deep learning, malaira, cells, classification, biomedical"
}

Z. Liang, S. Jaeger, G. Thoma, J. Huang, P. Guo, A. Powell, K. Silamut, I. Ersoy, M. Poostchi, K. Palaniappan, and R. J. Maude. CNN - Based Image Analysis for Malaria Diagnosis. Proc. IEEE International Conference on Bioinformatics and Biomedicine (BIBM), December 2016.

#227: External lab: L. Alzubaidi, I. Ersoy, D. Shin, and F. Bunyak

Nucleus Detection in H&E Images with Fully Convolutional Regression Networks

Proc. First International Workshop on Deep Learning for Pattern Recognition (DLPR), 2016

Bibtex, PlainText, Google Scholar

@inproceedings{Alzubaidi:histopathology-nucleus-deeplearning-2016b,
  author = "L. Alzubaidi and I. Ersoy and D. Shin and F. Bunyak",
  title = "Nucleus Detection in H&E Images with Fully Convolutional Regression Networks",
  year = 2016,
  journal = "Proc. First International Workshop on Deep Learning for Pattern Recognition (DLPR)",
  month = "Dec"
}

#226: J. Kwon, A. Wang, D. J. Burke, H. E. Boudreau, K. J. Lekstrom, A. Korzeniowska, R. Sugamata, Y.-S. Kim, L. Yi, I. Ersoy, S. Jaeger, K. Palaniappan, D. R. Ambruso, S. H. Jackson, and T. L. Leto

Peroxiredoxin 6 (Prdx6) supports NADPH oxidase1 (Nox1)-based superoxide generation and cell migration

Free Radical Biology and Medicine, 2016

cell migration, biomedical

Abstract, Bibtex, PlainText, PDF, DOI, Google Scholar

@article{Kwon-Cell-Migration-FRBM2016,
  author = "J. Kwon and A. Wang and D. J. Burke and H. E. Boudreau and K. J. Lekstrom and A. Korzeniowska and R. Sugamata and Y.-S. Kim and L. Yi and I. Ersoy and S. Jaeger and K. Palaniappan and D. R. Ambruso and S. H. Jackson and T. L. Leto",
  title = "Peroxiredoxin 6 (Prdx6) supports NADPH oxidase1 (Nox1)-based superoxide generation and cell migration",
  year = 2016,
  journal = "Free Radical Biology and Medicine",
  month = "Apr",
  keywords = "cell migration, biomedical",
  doi = "10.1016/j.freeradbiomed.2016.04.009"
}

J. Kwon, A. Wang, D. J. Burke, H. E. Boudreau, K. J. Lekstrom, A. Korzeniowska, R. Sugamata, Y.-S. Kim, L. Yi, I. Ersoy, S. Jaeger, K. Palaniappan, D. R. Ambruso, S. H. Jackson, and T. L. Leto. Peroxiredoxin 6 (Prdx6) supports NADPH oxidase1 (Nox1)-based superoxide generation and cell migration. Free Radical Biology and Medicine, April 2016.

#233: Z. Al-Milaji, I. Ersoy, K. Palaniappan, and F. Bunyak

Hybrid Deep Learning Framework for the Classification of Epithelial and Stromal Tissues in H&E Images

Proc. First International Workshop on Deep Learning for Pattern Recognition (DLPR), 2016

deep learning, histopathology, segmentation

Bibtex, PlainText, URL, Google Scholar

@inproceedings{Al-Milaji:histopathology-deeplearning-2016a,
  author = "Z. Al-Milaji and I. Ersoy and K. Palaniappan and F. Bunyak",
  title = "Hybrid Deep Learning Framework for the Classification of Epithelial and Stromal Tissues in H&E Images",
  year = 2016,
  journal = "Proc. First International Workshop on Deep Learning for Pattern Recognition (DLPR)",
  keywords = "deep learning, histopathology, segmentation",
  url = "http://dlpr2016.csp.escience.cn/dct/page/70005"
}

#216: W. R. Thissell, R. Czajkowski, F. Schrenk, T. Selway, A. J. Ries, S. Patel, P. L. McDermott, R. Moten, R. Rudnicki, G. Seetharaman, I. Ersoy, and K. Palaniappan

A scalable architecture for operational FMV exploitation (AVAA)

Proc. IEEE International Conference on Computer Vision Workshop (ICCVW) Video Summarization for Large-scale Analytics Workshop, 2015

fmv, motion, features, image anlaysis, wami

Abstract, Bibtex, PlainText, PDF, URL, DOI, Google Scholar

@inproceedings{Thissell:FMV-Exploitation-ICCVW-2016,
  author = "W. R. Thissell and R. Czajkowski and F. Schrenk and T. Selway and A. J. Ries and S. Patel and P. L. McDermott and R. Moten and R. Rudnicki and G. Seetharaman and I. Ersoy and K. Palaniappan",
  title = "A scalable architecture for operational FMV exploitation (AVAA)",
  year = 2015,
  journal = "Proc. IEEE International Conference on Computer Vision Workshop (ICCVW) Video Summarization for Large-scale Analytics Workshop",
  month = "Dec",
  keywords = "fmv, motion, features, image anlaysis, wami",
  doi = "10.1109/ICCVW.2015.139",
  url = "https://sites.google.com/site/lsvsiccv2015/video-summarization-for-large-scale-analytics-workshop"
}

W. R. Thissell, R. Czajkowski, F. Schrenk, T. Selway, A. J. Ries, S. Patel, P. L. McDermott, R. Moten, R. Rudnicki, G. Seetharaman, I. Ersoy, and K. Palaniappan. A scalable architecture for operational FMV exploitation (AVAA). Proc. IEEE International Conference on Computer Vision Workshop (ICCVW) Video Summarization for Large-scale Analytics Workshop, December 2015.

#215: F. Bunyak, A. Hafiane, Z. Al-Milagi, I. Ersoy, A. Haridas, and K. Palaniappan

A segmentation-based multi-scale framework for the classification of epithelial and stromal tissues in H&E images

Proc. IEEE International Conference on Bioinformatics and Biomedicine (BIBM), pgs. 450-453, 2015

biomedical, histopathology, segmentation, classification

Abstract, Bibtex, PlainText, PDF, URL, Google Scholar

@inproceedings{Bunyak:histo-seg-2015,
  author = "F. Bunyak and A. Hafiane and Z. Al-Milagi and I. Ersoy and A. Haridas and K. Palaniappan",
  title = "A segmentation-based multi-scale framework for the classification of epithelial and stromal tissues in H&E images",
  year = 2015,
  booktitle = "Proc. IEEE International Conference on Bioinformatics and Biomedicine (BIBM)",
  pages = "450-453",
  keywords = "biomedical, histopathology, segmentation, classification",
  url = "http://cci.drexel.edu/ieeebibm/bibm2015/index.html"
}

F. Bunyak, A. Hafiane, Z. Al-Milagi, I. Ersoy, A. Haridas, and K. Palaniappan. A segmentation-based multi-scale framework for the classification of epithelial and stromal tissues in H&E images. Proc. IEEE International Conference on Bioinformatics and Biomedicine (BIBM), pages 450-453, 2015.

#177: Z. Hong, Z. Sun, M. Li, Z. Li, F. Bunyak, I. Ersoy, J. P. Trzeciakowski, M. C. Staiculescu, M. Jin, L. Martinez-Lemus, M. A. Hill, K. Palaniappan, and G. A. Meininger

Vasoactive agonists exert dynamic and coordinated effects on vascular smooth muscle cell elasticity, cytoskeletal remodelling and adhesion

The Journal of Physiology, Volume 592, pgs. 1249-1266, 2014

biomedical, vascular

Abstract, Bibtex, PlainText, PDF, URL, DOI, Google Scholar

@article{Hong:Vasoactive-Physiology-2014a,
  author = "Z. Hong and Z. Sun and M. Li and Z. Li and F. Bunyak and I. Ersoy and J. P. Trzeciakowski and M. C. Staiculescu and M. Jin and L. Martinez-Lemus and M. A. Hill and K. Palaniappan and G. A. Meininger",
  title = "Vasoactive agonists exert dynamic and coordinated effects on vascular smooth muscle cell elasticity, cytoskeletal remodelling and adhesion",
  year = 2014,
  journal = "The Journal of Physiology",
  volume = 592,
  pages = "1249-1266",
  month = "Mar",
  keywords = "biomedical, vascular",
  doi = "10.1113/jphysiol.2013.264929",
  url = "http://jp.physoc.org/content/592/6/1249.short"
}

Z. Hong, Z. Sun, M. Li, Z. Li, F. Bunyak, I. Ersoy, J. P. Trzeciakowski, M. C. Staiculescu, M. Jin, L. Martinez-Lemus, M. A. Hill, K. Palaniappan, and G. A. Meininger. Vasoactive agonists exert dynamic and coordinated effects on vascular smooth muscle cell elasticity, cytoskeletal remodelling and adhesion. The Journal of Physiology, volume 592, pages 1249-1266, March 2014.

#169: Z. Hong, I. Ersoy, M. Sun, F. Bunyak, P. Hampel, Z. Hong, Z. Sun, Z. Li, I. Levitan, G. A. Meininger, and K. Palaniappan

Influence of membrane cholesterol and substrate elasticity on endothelial cell spreading behavior

J. Biomedical Material Research Part A, 2013

cell segmentation, active contours, high content, biomedical

Abstract, Bibtex, PlainText, PDF, PubMed, DOI, Google Scholar

@article{Zhongqui:cell-spreading-2012,
  author = "Z. Hong and I. Ersoy and M. Sun and F. Bunyak and P. Hampel and Z. Hong and Z. Sun and Z. Li and I. Levitan and G. A. Meininger and K. Palaniappan",
  title = "Influence of membrane cholesterol and substrate elasticity on endothelial cell spreading behavior",
  year = 2013,
  journal = "J. Biomedical Material Research Part A",
  keywords = "cell segmentation, active contours, high content, biomedical",
  doi = "10.1002/jbm.a.34504",
  url = "http://www.ncbi.nlm.nih.gov/pubmed/23239612"
}

Z. Hong, I. Ersoy, M. Sun, F. Bunyak, P. Hampel, Z. Hong, Z. Sun, Z. Li, I. Levitan, G. A. Meininger, and K. Palaniappan. Influence of membrane cholesterol and substrate elasticity on endothelial cell spreading behavior. J. Biomedical Material Research Part A, 2013.

#154: I. Ersoy, K. Palaniappan, G. Seetharaman, and R. Rao

Interactive tracking for persistent wide-area surveillance

Proc. SPIE Conf. Geospatial InfoFusion II (Defense, Security and Sensing: Sensor Data and Information Exploitation), Volume 8396, 2012

wami, tracking, fmv, features, motion, fusion, dod

Abstract, Bibtex, PlainText, PDF, Google Scholar

@inproceedings{Ersoy:tracking_SPIE-2012,
  author = "I. Ersoy and K. Palaniappan and G. Seetharaman and R. Rao",
  title = "Interactive tracking for persistent wide-area surveillance",
  year = 2012,
  booktitle = "Proc. SPIE Conf. Geospatial InfoFusion II (Defense, Security and Sensing: Sensor Data and Information Exploitation)",
  volume = 8396,
  keywords = "wami, tracking, fmv, features, motion, fusion, dod"
}

I. Ersoy, K. Palaniappan, G. Seetharaman, and R. Rao. Interactive tracking for persistent wide-area surveillance. Proc. SPIE Conf. Geospatial InfoFusion II (Defense, Security and Sensing: Sensor Data and Information Exploitation), volume 8396, 2012.

#161: I. Ersoy, F. Bunyak, J. Higgins, and K. Palaniappan

Coupled edge profile geodesic active contours for red blood cell flow analysis

IEEE Int. Symposium on Biomedical Imaging (ISBI), 2012

cell segmentation, level set active contours, red blood cells, cell tracking, biomedical

Abstract, Bibtex, PlainText, PDF, URL, DOI, Google Scholar

@inproceedings{Ersoy:ISBI-2012-rbc,
  author = "I. Ersoy and F. Bunyak and J. Higgins and K. Palaniappan",
  title = "Coupled edge profile geodesic active contours for red blood cell flow analysis",
  year = 2012,
  booktitle = "IEEE Int. Symposium on Biomedical Imaging (ISBI)",
  keywords = "cell segmentation, level set active contours, red blood cells, cell tracking, biomedical",
  doi = "10.1109/ISBI.2012.6235656",
  url = "http://ieeexplore.ieee.org/xpl/articleDetails.jsp?tp=&arnumber=6235656"
}

I. Ersoy, F. Bunyak, J. Higgins, and K. Palaniappan. Coupled edge profile geodesic active contours for red blood cell flow analysis. IEEE Int. Symposium on Biomedical Imaging (ISBI), 2012.

#141: I. Ersoy, K. Palaniappan, and G. Seetharaman

Visual tracking with robust target localization

IEEE Int. Conf. Image Processing, pgs. 1365--1368, 2012

wami, tracking, fmv, features, motion, dod

Abstract, Bibtex, PlainText, PDF, Google Scholar

@inproceedings{Ersoy:csurf_ICIP-2012-csurf,
  author = "I. Ersoy and K. Palaniappan and G. Seetharaman",
  title = "Visual tracking with robust target localization",
  year = 2012,
  booktitle = "IEEE Int. Conf. Image Processing",
  pages = "1365--1368",
  keywords = "wami, tracking, fmv, features, motion, dod"
}

I. Ersoy, K. Palaniappan, and G. Seetharaman. Visual tracking with robust target localization. IEEE Int. Conf. Image Processing, pages 1365--1368, 2012.

#155: I. Ersoy, F. Bunyak, K. Palaniappan, and J. Peng

HEp-2 Cell Classification in IIF Images Using ShareBoost

Int. Conf. Pattern Recognition, 2012

cell detection, cell classification, features, texture, machine learning, data mining, biomedical

Abstract, Bibtex, PlainText, PDF, URL, Google Scholar

@inproceedings{Ersoy:ICPR-2012-hep2,
  author = "I. Ersoy and F. Bunyak and K. Palaniappan and J. Peng",
  title = "HEp-2 Cell Classification in IIF Images Using ShareBoost",
  year = 2012,
  booktitle = "Int. Conf. Pattern Recognition",
  keywords = "cell detection, cell classification, features, texture, machine learning, data mining, biomedical",
  url = "http://ieeexplore.ieee.org/xpls/abs_all.jsp?arnumber=6460885"
}

I. Ersoy, F. Bunyak, K. Palaniappan, and J. Peng. HEp-2 Cell Classification in IIF Images Using ShareBoost. Int. Conf. Pattern Recognition, 2012.

#128: K. Palaniappan, I. Ersoy, G. Seetharaman, S. Davis, P. Kumar, R. M. Rao, and R. Linderman

Parallel flux tensor analysis for efficient moving object detection

14th Int. Conf. Information Fusion, 2011

parallelization, wami, tracking, fmv, motion, dod

Abstract, Bibtex, PlainText, PDF, URL, Google Scholar

@inproceedings{Pal:flux_Fusion-2011,
  author = "K. Palaniappan and I. Ersoy and G. Seetharaman and S. Davis and P. Kumar and R. M. Rao and R. Linderman",
  title = "Parallel flux tensor analysis for efficient moving object detection",
  year = 2011,
  booktitle = "14th Int. Conf. Information Fusion",
  keywords = "parallelization, wami, tracking, fmv, motion, dod",
  url = "http://ieeexplore.ieee.org/xpls/abs_all.jsp?arnumber=5977499"
}

K. Palaniappan, I. Ersoy, G. Seetharaman, S. Davis, P. Kumar, R. M. Rao, and R. Linderman. Parallel flux tensor analysis for efficient moving object detection. 14th Int. Conf. Information Fusion, 2011.

#114: K. Palaniappan, F. Bunyak, P. Kumar, I. Ersoy, S. Jaeger, K. Ganguli, A. Haridas, J. Fraser, R. Rao, and G. Seetharaman

Efficient feature extraction and likelihood fusion for vehicle tracking in low frame rate airborne video

13th Int. Conf. Information Fusion, 2010

wami, tracking, fmv, motion, features, fusion, dod

Abstract, Bibtex, PlainText, PDF, URL, DOI, Google Scholar

@inproceedings{Pal:Fusion-2010,
  author = "K. Palaniappan and F. Bunyak and P. Kumar and I. Ersoy and S. Jaeger and K. Ganguli and A. Haridas and J. Fraser and R. Rao and G. Seetharaman",
  title = "Efficient feature extraction and likelihood fusion for vehicle tracking in low frame rate airborne video",
  year = 2010,
  booktitle = "13th Int. Conf. Information Fusion",
  keywords = "wami, tracking, fmv, motion, features, fusion, dod",
  doi = "10.1109/ICIF.2010.5711891",
  url = "http://ieeexplore.ieee.org/xpls/abs_all.jsp?arnumber=5711891"
}

K. Palaniappan, F. Bunyak, P. Kumar, I. Ersoy, S. Jaeger, K. Ganguli, A. Haridas, J. Fraser, R. Rao, and G. Seetharaman. Efficient feature extraction and likelihood fusion for vehicle tracking in low frame rate airborne video. 13th Int. Conf. Information Fusion, 2010.

#110: K. Palaniappan, I. Ersoy, G. Seetharaman, S. Davis, R. Rao, and R. Linderman

Multicore energy efficient flux tensor for video analysis

IEEE Workshop on Energy Efficient High-Performance Computing (EEHiPC), 2010

parallelization, wami, tracking, fmv, motion, dod

Abstract, Bibtex, PlainText, PDF, URL, Google Scholar

@inproceedings{Pal:EEHiPC-2010,
  author = "K. Palaniappan and I. Ersoy and G. Seetharaman and S. Davis and R. Rao and R. Linderman",
  title = "Multicore energy efficient flux tensor for video analysis",
  year = 2010,
  booktitle = "IEEE Workshop on Energy Efficient High-Performance Computing (EEHiPC)",
  keywords = "parallelization, wami, tracking, fmv, motion, dod",
  url = "http://nsfcac.rutgers.edu/GreenHPC/EEHiPC/eehipc_palaniappan.pdf"
}

K. Palaniappan, I. Ersoy, G. Seetharaman, S. Davis, R. Rao, and R. Linderman. Multicore energy efficient flux tensor for video analysis. IEEE Workshop on Energy Efficient High-Performance Computing (EEHiPC), 2010.

#96: K. Palaniappan, I. Ersoy, A. Hafiane, and G. Seetharaman

Moving object detection in UAV-video using flux tensors

IEEE Int. Geoscience and Remote Sensing Symposium, 2009

wami, tracking, fmv, registration, motion, fusion, dod

Bibtex, PlainText, Google Scholar

@inproceedings{Hafiane:IGARSS-2009,
  author = "K. Palaniappan and I. Ersoy and A. Hafiane and G. Seetharaman",
  title = "Moving object detection in UAV-video using flux tensors",
  year = 2009,
  booktitle = "IEEE Int. Geoscience and Remote Sensing Symposium",
  keywords = "wami, tracking, fmv, registration, motion, fusion, dod"
}

#89: I. Ersoy, F. Bunyak, V. Chagin, M. C. Cardoso, and K. Palaniappan

Segmentation and classification of cell cycle phases in fluorescence imaging

Lecture Notes in Computer Science (MICCAI), Volume 5762, pgs. 617--624, 2009

cell detection, cell segmentation, cell classification, features, texture, machine learning, data mining, biomedical

Abstract, Bibtex, PlainText, PDF, PubMed, DOI, Google Scholar

@article{Ersoy:MICCAI-2009,
  author = "I. Ersoy and F. Bunyak and V. Chagin and M. C. Cardoso and K. Palaniappan",
  title = "Segmentation and classification of cell cycle phases in fluorescence imaging",
  year = 2009,
  journal = "Lecture Notes in Computer Science (MICCAI)",
  volume = 5762,
  pages = "617--624",
  keywords = "cell detection, cell segmentation, cell classification, features, texture, machine learning, data mining, biomedical",
  doi = "10.1007/978-3-642-04271-3_75",
  url = "http://www.ncbi.nlm.nih.gov/pubmed/20426163"
}

I. Ersoy, F. Bunyak, V. Chagin, M. C. Cardoso, and K. Palaniappan. Segmentation and classification of cell cycle phases in fluorescence imaging. Lecture Notes in Computer Science (MICCAI), volume 5762, pages 617--624, 2009.

#87: A. Mosig, S. Jaeger, W. Chaofeng, I. Ersoy, S. K. Nath, K. Palaniappan, and S. Chen

Tracking cells in live cell imaging videos using topological alignments

Algorithms in Molecular Biology, Volume 4, pgs. 10p, 2009

cell detection, cell segmentation, cell tracking, features, biomedical

Abstract, Bibtex, PlainText, PDF, URL, DOI, Google Scholar

@article{AxelMosig:topoalign-2009,
  author = "A. Mosig and S. Jaeger and W. Chaofeng and I. Ersoy and S. K. Nath and K. Palaniappan and S. Chen",
  title = "Tracking cells in live cell imaging videos using topological alignments",
  year = 2009,
  journal = "Algorithms in Molecular Biology",
  volume = 4,
  pages = "10p",
  keywords = "cell detection, cell segmentation, cell tracking, features, biomedical",
  doi = "10.1186/1748-7188-4-10",
  url = "http://www.almob.org/content/4/1/10"
}

A. Mosig, S. Jaeger, W. Chaofeng, I. Ersoy, S. K. Nath, K. Palaniappan, and S. Chen. Tracking cells in live cell imaging videos using topological alignments. Algorithms in Molecular Biology, volume 4, pages 10p, 2009.

#83: I. Ersoy, F. Bunyak, M. A. Mackey, and K. Palaniappan

Cell segmentation using Hessian-based detection and contour evolution with directional derivatives

IEEE Int. Conf. Image Processing, pgs. 1804--1807, 2008

cell segmentation, cell detection, active contours, features, biomedical

Abstract, Bibtex, PlainText, PDF, URL, DOI, Google Scholar

@inproceedings{Ersoy:ICIP-2008,
  author = "I. Ersoy and F. Bunyak and M. A. Mackey and K. Palaniappan",
  title = "Cell segmentation using Hessian-based detection and contour evolution with directional derivatives",
  year = 2008,
  booktitle = "IEEE Int. Conf. Image Processing",
  pages = "1804--1807",
  keywords = "cell segmentation, cell detection, active contours, features, biomedical",
  doi = "10.1109/ICIP.2008.4712127",
  url = "http://ieeexplore.ieee.org/xpl/articleDetails.jsp?arnumber=4712127"
}

I. Ersoy, F. Bunyak, M. A. Mackey, and K. Palaniappan. Cell segmentation using Hessian-based detection and contour evolution with directional derivatives. IEEE Int. Conf. Image Processing, pages 1804--1807, 2008.

#82: I. Ersoy, F. Bunyak, K. Palaniappan, M. Sun, and G. Forgacs

Cell spreading analysis with directed edge profile-guided level set active contours

Lecture Notes in Computer Science (MICCAI), Volume 5241, pgs. 376--383, 2008

cell segmentation, active contours, high content, biomedical

Abstract, Bibtex, PlainText, PDF, PubMed, DOI, Google Scholar

@article{Ersoy:MICCAI-2008,
  author = "I. Ersoy and F. Bunyak and K. Palaniappan and M. Sun and G. Forgacs",
  title = "Cell spreading analysis with directed edge profile-guided level set active contours",
  year = 2008,
  journal = "Lecture Notes in Computer Science (MICCAI)",
  volume = 5241,
  pages = "376--383",
  keywords = "cell segmentation, active contours, high content, biomedical",
  doi = "10.1007/978-3-540-85988-8_45",
  url = "http://www.ncbi.nlm.nih.gov/pubmed/18979769"
}

I. Ersoy, F. Bunyak, K. Palaniappan, M. Sun, and G. Forgacs. Cell spreading analysis with directed edge profile-guided level set active contours. Lecture Notes in Computer Science (MICCAI), volume 5241, pages 376--383, 2008.

#74: I. Ersoy and K. Palaniappan

Multi-feature contour evolution for automatic live cell segmentation in time lapse imagery

30th IEEE Engineering in Medicine and Biology Society Conf. (EMBC), pgs. 371--374, 2008

cell segmentation, active contours, cell tracking, high content, biomedical

Abstract, Bibtex, PlainText, PDF, PubMed, DOI, Google Scholar

@inproceedings{Ersoy:EMBC-2008,
  author = "I. Ersoy and K. Palaniappan",
  title = "Multi-feature contour evolution for automatic live cell segmentation in time lapse imagery",
  year = 2008,
  booktitle = "30th IEEE Engineering in Medicine and Biology Society Conf. (EMBC)",
  pages = "371--374",
  keywords = "cell segmentation, active contours, cell tracking, high content, biomedical",
  doi = "10.1109/IEMBS.2008.4649167",
  url = "http://www.ncbi.nlm.nih.gov/pubmed/19162670"
}

I. Ersoy and K. Palaniappan. Multi-feature contour evolution for automatic live cell segmentation in time lapse imagery. 30th IEEE Engineering in Medicine and Biology Society Conf. (EMBC), pages 371--374, 2008.

#66: K. Palaniappan, I. Ersoy, and S. K. Nath

Moving object segmentation using the flux tensor for biological video microscopy

Lecture Notes in Computer Science (PCM), Volume 4810, pgs. 483-493, 2007

motion, fusion, tracking, active contours, features

Abstract, Bibtex, PlainText, URL, DOI, Google Scholar

@article{Palani:PCM-2007,
  author = "K. Palaniappan and I. Ersoy and S. K. Nath",
  title = "Moving object segmentation using the flux tensor for biological video microscopy",
  year = 2007,
  journal = "Lecture Notes in Computer Science (PCM)",
  volume = 4810,
  pages = "483-493",
  keywords = "motion, fusion, tracking, active contours, features",
  doi = "10.1007/978-3-540-77255-2_63",
  url = "http://link.springer.com/chapter/10.1007%2F978-3-540-77255-2_63"
}

K. Palaniappan, I. Ersoy, and S. K. Nath. Moving object segmentation using the flux tensor for biological video microscopy. Lecture Notes in Computer Science (PCM), volume 4810, pages 483-493, 2007.

28 Publications by "I. Ersoy"

27 CIVA Publications and 1 external publications

deep learning, malaira, cells, classification, biomedical

cell migration, biomedical

deep learning, histopathology, segmentation

fmv, motion, features, image anlaysis, wami

biomedical, histopathology, segmentation, classification

biomedical, vascular

cell segmentation, active contours, high content, biomedical

wami, tracking, fmv, features, motion, fusion, dod

cell segmentation, level set active contours, red blood cells, cell tracking, biomedical

wami, tracking, fmv, features, motion, dod

cell detection, cell classification, features, texture, machine learning, data mining, biomedical

parallelization, wami, tracking, fmv, motion, dod

wami, tracking, fmv, motion, features, fusion, dod

parallelization, wami, tracking, fmv, motion, dod

wami, tracking, fmv, registration, motion, fusion, dod

cell detection, cell segmentation, cell classification, features, texture, machine learning, data mining, biomedical

cell detection, cell segmentation, cell tracking, features, biomedical

cell segmentation, cell detection, active contours, features, biomedical

cell segmentation, active contours, high content, biomedical

cell segmentation, active contours, cell tracking, high content, biomedical

motion, fusion, tracking, active contours, features